View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10602_low_68 (Length: 244)
Name: NF10602_low_68
Description: NF10602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10602_low_68 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 10972317 - 10972542
Alignment:
| Q |
1 |
tctcggcttcttctagcaatgctttgatccatccaccactttgctcaaatcggcgcaatgatttgcagtgaagcagcattcctcctaccatgccagggac |
100 |
Q |
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| T |
10972317 |
tctcggcttcttctagcaatgctttgatccatccaccactttgctcaaatcggcgcaatgatttgcagtgaagcagcattcctcctaccatcccagggac |
10972416 |
T |
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| Q |
101 |
agcagctactgtctcaagcatcattgctcggcatccataccttctctgtttcaattgaatacaacataagttagaaattacataaaatacttttgatctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10972417 |
agcagctactgtctcaagcatcattgctcggcatccataccttctctgtttcaattgaatacaacataagttagaaattacataaaatacttttgatctt |
10972516 |
T |
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| Q |
201 |
ggtgttagtaactaaaagaaactttg |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
10972517 |
ggtgttagtaactaaaagaaactttg |
10972542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 37469504 - 37469357
Alignment:
| Q |
1 |
tctcggcttcttctagcaatgctttgatccatccaccactttgctcaaatcggcgcaatgatttgcagtgaagcagcattcctcctaccatgccagggac |
100 |
Q |
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|||| |||||||| ||||||||||||| ||| |||||||| |||| |||| || | ||| ||| ||| | |||||| ||||| ||||| |||||||| |
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| T |
37469504 |
tctctgcttcttcaagcaatgctttgacccaaccaccactatgctgaaattttcggagtgacttgaggtgcaacagcatccctccaaccattccagggac |
37469405 |
T |
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| Q |
101 |
agcagctactgtctcaagcatcattgctcggcatccataccttctctg |
148 |
Q |
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||| || ||||| |||||||||||||| ||||| ||||| | |||||| |
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| T |
37469404 |
agctgcaactgtttcaagcatcattgcacggcaaccataacgtctctg |
37469357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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