View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10602_low_69 (Length: 244)

Name: NF10602_low_69
Description: NF10602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10602_low_69
NF10602_low_69
[»] chr7 (2 HSPs)
chr7 (24-234)||(46418546-46418758)
chr7 (34-80)||(25251500-25251546)
[»] chr5 (2 HSPs)
chr5 (24-80)||(3421972-3422028)
chr5 (34-70)||(17861460-17861496)
[»] chr8 (4 HSPs)
chr8 (34-77)||(36919304-36919347)
chr8 (19-71)||(24033255-24033308)
chr8 (34-71)||(39756968-39757005)
chr8 (34-70)||(24199830-24199866)
[»] chr4 (2 HSPs)
chr4 (24-71)||(18458751-18458798)
chr4 (21-73)||(19089035-19089089)
[»] chr3 (1 HSPs)
chr3 (19-71)||(2187978-2188031)
[»] chr2 (2 HSPs)
chr2 (34-71)||(12742992-12743029)
chr2 (35-71)||(33263732-33263768)
[»] chr6 (2 HSPs)
chr6 (21-71)||(15291705-15291752)
chr6 (20-71)||(20480641-20480693)
[»] chr1 (1 HSPs)
chr1 (19-71)||(23309463-23309515)


Alignment Details
Target: chr7 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 24 - 234
Target Start/End: Original strand, 46418546 - 46418758
Alignment:
Q  24 ttgcatatattattatacattgtttttaccaactaagttaagctcacggaaacataatcaattatctatatcgcattgcatataatctttaaactattaa 123  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  46418546 ttgcatatattattatacattgttcttaccaactgagttaagctcacgggaacataattaattatctatatcacattgcatataatctttaaactattaa 46418645  T
Q  124 aatcaataatatagtccctaaactattgt--taaaaaacaaaatttagcccctcaacgtttaattttannnnnnngttcatccgcattctcatatttatc 221  Q
    |||||||||||||||||| ||||||||||   ||||||||||||||||||||||||||||||||||||       |||||||| ||||||||||||||||    
T  46418646 aatcaataatatagtccccaaactattgtaagaaaaaacaaaatttagcccctcaacgtttaattttatttttttgttcatccacattctcatatttatc 46418745  T
Q  222 gcgtagcattcat 234  Q
    |||||||||||||    
T  46418746 gcgtagcattcat 46418758  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 80
Target Start/End: Complemental strand, 25251546 - 25251500
Alignment:
Q  34 tattatacattgtttttaccaactaagttaagctcacggaaacataa 80  Q
    |||||| |||||||| |||||||| ||||||||||||||| ||||||    
T  25251546 tattatgcattgtttataccaactgagttaagctcacggagacataa 25251500  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 3422028 - 3421972
Alignment:
Q  24 ttgcatatattattatacattgtttttaccaactaagttaagctcacggaaacataa 80  Q
    |||||||||||||||| |||||||| |||||||||||||||| |||||  |||||||    
T  3422028 ttgcatatattattatgcattgtttctaccaactaagttaagatcacgagaacataa 3421972  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 17861460 - 17861496
Alignment:
Q  34 tattatacattgtttttaccaactaagttaagctcac 70  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  17861460 tattatacattgtctttaccaactaagctaagctcac 17861496  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 77
Target Start/End: Complemental strand, 36919347 - 36919304
Alignment:
Q  34 tattatacattgtttttaccaactaagttaagctcacggaaaca 77  Q
    |||||||||||||| ||||||||| |||||||||||||||||||    
T  36919347 tattatacattgttcttaccaactgagttaagctcacggaaaca 36919304  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 24033308 - 24033255
Alignment:
Q  19 agaccttgcatatattat-tatacattgtttttaccaactaagttaagctcacg 71  Q
    |||||||||||||||||| ||| ||||||  |||||||||||||||||||||||    
T  24033308 agaccttgcatatattatatatgcattgtccttaccaactaagttaagctcacg 24033255  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 39757005 - 39756968
Alignment:
Q  34 tattatacattgtttttaccaactaagttaagctcacg 71  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  39757005 tattatacattatttttaccaactaagttaagctcacg 39756968  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 24199830 - 24199866
Alignment:
Q  34 tattatacattgtttttaccaactaagttaagctcac 70  Q
    ||||||||||||| |||||||||| ||||||||||||    
T  24199830 tattatacattgtgtttaccaactgagttaagctcac 24199866  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 18458798 - 18458751
Alignment:
Q  24 ttgcatatattattatacattgtttttaccaactaagttaagctcacg 71  Q
    |||||||||||||||| |||||||| |||||||| |||||| ||||||    
T  18458798 ttgcatatattattatgcattgtttctaccaactgagttaaactcacg 18458751  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 19089089 - 19089035
Alignment:
Q  21 accttgcatatattat--tatacattgtttttaccaactaagttaagctcacgga 73  Q
    ||||||||||||||||  |||||||||| ||||||||| |||||||||| |||||    
T  19089089 accttgcatatattatgttatacattgtgtttaccaacaaagttaagcttacgga 19089035  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 2188031 - 2187978
Alignment:
Q  19 agaccttgcatat-attattatacattgtttttaccaactaagttaagctcacg 71  Q
    ||||||||||||| ||||||||||||||| | |||||||| || ||||||||||    
T  2188031 agaccttgcatattattattatacattgtctataccaactgagctaagctcacg 2187978  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 71
Target Start/End: Original strand, 12742992 - 12743029
Alignment:
Q  34 tattatacattgtttttaccaactaagttaagctcacg 71  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  12742992 tattatatattgttcttaccaactaagttaagctcacg 12743029  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 33263768 - 33263732
Alignment:
Q  35 attatacattgtttttaccaactaagttaagctcacg 71  Q
    |||||||||||||||||| |||| |||||||||||||    
T  33263768 attatacattgtttttactaactgagttaagctcacg 33263732  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 15291705 - 15291752
Alignment:
Q  21 accttgcatatattattatacattgtttttaccaactaagttaagctcacg 71  Q
    |||||||||||||||||   ||||||  |||||||||||||||||||||||    
T  15291705 accttgcatatattatt---cattgtccttaccaactaagttaagctcacg 15291752  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 20480641 - 20480693
Alignment:
Q  20 gaccttgcatatatta-ttatacattgtttttaccaactaagttaagctcacg 71  Q
    |||||||||||||||| |||| |||||||  |||||||| |||||||||||||    
T  20480641 gaccttgcatatattaattatgcattgttcctaccaactgagttaagctcacg 20480693  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 23309515 - 23309463
Alignment:
Q  19 agaccttgcatatattattatacattgtttttaccaactaagttaagctcacg 71  Q
    ||||||||||||||||||||| |||||| | |||||||| |  ||||||||||    
T  23309515 agaccttgcatatattattatgcattgtctataccaactgaactaagctcacg 23309463  T

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