View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10602_low_7 (Length: 406)
Name: NF10602_low_7
Description: NF10602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10602_low_7 |
 | |
|
| [»] scaffold0570 (1 HSPs) |
| | |
|
| [»] scaffold0479 (1 HSPs) |
| | |
|
| [»] scaffold0233 (1 HSPs) |
| | |
|
| [»] scaffold1476 (1 HSPs) |
| | |
|
| [»] scaffold0112 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 140 - 385
Target Start/End: Original strand, 51899379 - 51899624
Alignment:
| Q |
140 |
aagaaaggaagcttatagcttttcattattaatcaaagtagttatacaatgaggaatgttaagatgcaaatggaaactaacatgtgataatgcttcccta |
239 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
51899379 |
aagaaaagaagcttatagcttttcattattaatcaaagtagttatacaatgaggaatgttaagatgcaaatggaaactagcatgtgatagtgcttcccta |
51899478 |
T |
|
| Q |
240 |
gctaagctatgggcaacaccattgacttgtctcccaataaaactcacatcagagtttactaaatcggtcatcaacaagggtctacaatcatgaattattg |
339 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
51899479 |
gctaaattatgggcaacaccattggcttgtctcctaataaaactcacatcagagtttactaagtcggtcatcaacaagtgtctacaatcatgaattattg |
51899578 |
T |
|
| Q |
340 |
ccatacaatcagagacaccatatcctttataaatgctatctgccac |
385 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
51899579 |
ccataaaatcagagacaccatctcctttataaatgctatctgccac |
51899624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 143 - 373
Target Start/End: Original strand, 16932870 - 16933100
Alignment:
| Q |
143 |
aaaggaagcttatagcttttcattattaatcaaagtagttatacaatgaggaatgttaagatgcaaatggaaactaacatgtgataatgcttccctagct |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| || | ||||||||| ||||||||||||||||||||||| |
|
|
| T |
16932870 |
aaaggaagcttatagcttttcattattaatcaaagtagttatacaatgtggaatattaaaatatagttggaaactagcatgtgataatgcttccctagct |
16932969 |
T |
|
| Q |
243 |
aagctatgggcaacaccattgacttgtctcccaataaaactcacatcagagtttactaaatcggtcatcaacaagggtctacaatcatgaattattgcca |
342 |
Q |
| |
|
|| |||||||||||||||||| ||||||||| ||| |||||||||||||||||| |||||||||||||| |||| ||||||||||||| || ||||||| |
|
|
| T |
16932970 |
aaactatgggcaacaccattggcttgtctcctaattaaactcacatcagagtttgttaaatcggtcatcagcaagtgtctacaatcatggataattgcca |
16933069 |
T |
|
| Q |
343 |
tacaatcagagacaccatatcctttataaat |
373 |
Q |
| |
|
|| ||||||||||||||| |||||||||||| |
|
|
| T |
16933070 |
taaaatcagagacaccatttcctttataaat |
16933100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 143 - 385
Target Start/End: Original strand, 48536829 - 48537071
Alignment:
| Q |
143 |
aaaggaagcttatagcttttcattattaatcaaagtagttatacaatgaggaatgttaagatgcaaatggaaactaacatgtgataatgcttccctagct |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||| ||| || ||||||||||| ||||||||| |||||||||||||||||||| || |
|
|
| T |
48536829 |
aaaggaagcttatagcttttcattattaatcaaagaagttatacaataagggatattaagatgcaattggaaactagcatgtgataatgcttccctatct |
48536928 |
T |
|
| Q |
243 |
aagctatgggcaacaccattgacttgtctcccaataaaactcacatcagagtttactaaatcggtcatcaacaagggtctacaatcatgaattattgcca |
342 |
Q |
| |
|
||||||||||| |||| |||| |||||||| |||||||||||||||||||||| |||| ||| |||| ||||| | ||||||||||| || || |||| |
|
|
| T |
48536929 |
aagctatgggctacactattggcttgtctcttaataaaactcacatcagagtttgctaagtcgatcattaacaaatgcctacaatcatggatgatggcca |
48537028 |
T |
|
| Q |
343 |
tacaatcagagacaccatatcctttataaatgctatctgccac |
385 |
Q |
| |
|
|| ||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
48537029 |
taaaattagagacaccatctcctttataaatgctatctgccac |
48537071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 143 - 362
Target Start/End: Original strand, 12723363 - 12723582
Alignment:
| Q |
143 |
aaaggaagcttatagcttttcattattaatcaaagtagttatacaatgaggaatgttaagatgcaaatggaaactaacatgtgataatgcttccctagct |
242 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||| || || |||||| || ||||||||||||||||||||||| |
|
|
| T |
12723363 |
aaaggaagtttatagcttttcattattaatcaaagtagttatacaatatggaatattaaaatataattggaaattagcatgtgataatgcttccctagct |
12723462 |
T |
|
| Q |
243 |
aagctatgggcaacaccattgacttgtctcccaataaaactcacatcagagtttactaaatcggtcatcaacaagggtctacaatcatgaattattgcca |
342 |
Q |
| |
|
|| ||||||||||||||||||| || ||||| ||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||| || ||||||| |
|
|
| T |
12723463 |
aaactatgggcaacaccattgatttatctcctaattaaactcacatcagagtttattaaatcggtcatcaacaagtgtctacaatcatggataattgcca |
12723562 |
T |
|
| Q |
343 |
tacaatcagagacaccatat |
362 |
Q |
| |
|
|| ||||| ||||||||||| |
|
|
| T |
12723563 |
taaaatcatagacaccatat |
12723582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 147 - 358
Target Start/End: Complemental strand, 31637760 - 31637549
Alignment:
| Q |
147 |
gaagcttatagcttttcattattaatcaaagtagttatacaatgaggaatgttaagatgcaaatggaaactaacatgtgataatgcttccctagctaagc |
246 |
Q |
| |
|
||||||||||||||||||||||| ||||||| || |||||||| |||||||||||||| | |||| |||| | || || ||||||| ||||||| | |
|
|
| T |
31637760 |
gaagcttatagcttttcattattgatcaaagaagaaatacaatgtggaatgttaagatgaatgtggagactagcgtggtgtagtgcttccttagctaaac |
31637661 |
T |
|
| Q |
247 |
tatgggcaacaccattgacttgtctcccaataaaactcacatcagagtttactaaatcggtcatcaacaagggtctacaatcatgaattattgccataca |
346 |
Q |
| |
|
|||| |||||||||||||||||||||| ||| || ||||||||||||| ||||||||||| |||||||| |||||||||||| ||||||||||| | |
|
|
| T |
31637660 |
tatgagcaacaccattgacttgtctcctaatgaacttcacatcagagttcactaaatcggtactcaacaagtgtctacaatcattgattattgccatgaa |
31637561 |
T |
|
| Q |
347 |
atcagagacacc |
358 |
Q |
| |
|
|||||||||||| |
|
|
| T |
31637560 |
atcagagacacc |
31637549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 147 - 358
Target Start/End: Original strand, 6999442 - 6999653
Alignment:
| Q |
147 |
gaagcttatagcttttcattattaatcaaagtagttatacaatgaggaatgttaagatgcaaatggaaactaacatgtgataatgcttccctagctaagc |
246 |
Q |
| |
|
||||||||||||||||||||||| ||||||| || |||||||| |||||||||||| | | |||| |||| | || || ||||||| ||||||| | |
|
|
| T |
6999442 |
gaagcttatagcttttcattattgatcaaagaagaaatacaatgtggaatgttaagacgaatgtggagactagcgtggtgtagtgcttccttagctaaac |
6999541 |
T |
|
| Q |
247 |
tatgggcaacaccattgacttgtctcccaataaaactcacatcagagtttactaaatcggtcatcaacaagggtctacaatcatgaattattgccataca |
346 |
Q |
| |
|
|||| || ||||||||||||||||||| ||| || ||||||||||||| ||||||| ||| |||||||| |||||||||||| ||||||||||| | |
|
|
| T |
6999542 |
tatgagccacaccattgacttgtctcctaatgaacttcacatcagagttcactaaattggtactcaacaagtgtctacaatcattgattattgccatgaa |
6999641 |
T |
|
| Q |
347 |
atcagagacacc |
358 |
Q |
| |
|
|||||||||||| |
|
|
| T |
6999642 |
atcagagacacc |
6999653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 147 - 385
Target Start/End: Complemental strand, 25737691 - 25737450
Alignment:
| Q |
147 |
gaagcttatagcttttcattattaatcaaagtagttatacaatgaggaatgttaagatgcaaatggaaactaacatgtgataatgcttccctagctaagc |
246 |
Q |
| |
|
||||||||||| ||||||||||||||||||| | |||||||| |||||||||||||| || |||||| || |||| |||||||| |||||||| || |
|
|
| T |
25737691 |
gaagcttatagtttttcattattaatcaaagcatgaatacaatgtggaatgttaagatgaaattggaaattagcatgatgtaatgctttcctagctaggc |
25737592 |
T |
|
| Q |
247 |
tatgggcaacaccattgacttgtctcccaataaaactcacatcagagtttactaaatcggtcatcaacaagggt---ctacaatcatgaattattgccat |
343 |
Q |
| |
|
||||||||||| || | |||||||| |||||| | ||||||||||| |||||| |||||||||| || |||||||| |||||||| ||||| |
|
|
| T |
25737591 |
tatgggcaacattataggtttgtctcctaataaactttacatcagagttcgctaaattaatcatcaacaattgtctactacaatcgtgaattatagccat |
25737492 |
T |
|
| Q |
344 |
acaatcagagacaccatatcctttataaatgctatctgccac |
385 |
Q |
| |
|
| ||| ||||||||||| ||||| || || ||||||||||| |
|
|
| T |
25737491 |
ataattagagacaccatcccctttgtagatactatctgccac |
25737450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 147 - 360
Target Start/End: Original strand, 30468639 - 30468852
Alignment:
| Q |
147 |
gaagcttatagcttttcattattaatcaaagtagttatacaatgaggaatgttaagatgcaaatggaaactaacatgtgataatgcttccctagctaagc |
246 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||| ||||| |||||||| ||||||||||| |||| || |||||||||||||| |
|
|
| T |
30468639 |
gaagcttatagcttttcattattaattaaagtatgaatacaatgtggaatattaagatgataatggaaactagcatgatttagtgcttccctagctagat |
30468738 |
T |
|
| Q |
247 |
tatgggcaacaccattgacttgtctcccaataaaactcacatcagagtttactaaatcggtcatcaacaagggtctacaatcatgaattattgccataca |
346 |
Q |
| |
|
|||||||| ||| |||| ||||||||| ||| || ||||||||||||| ||||||| ||||| || | |||||||||| || ||||| ||||| | |
|
|
| T |
30468739 |
tatgggcagcactattggcttgtctcctaatgaacttcacatcagagttcgctaaatcagtcattaaaagatgtctacaatcgtgtattatggccatgaa |
30468838 |
T |
|
| Q |
347 |
atcagagacaccat |
360 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
30468839 |
atctgagacaccat |
30468852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 205
Target Start/End: Complemental strand, 25178010 - 25177952
Alignment:
| Q |
147 |
gaagcttatagcttttcattattaatcaaagtagttatacaatgaggaatgttaagatg |
205 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||| |
|
|
| T |
25178010 |
gaagcttatagcttttcattattgatcaaagtagaaatacaatgtggaatgttaagatg |
25177952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 148 - 356
Target Start/End: Original strand, 26678104 - 26678312
Alignment:
| Q |
148 |
aagcttatagcttttcattattaatcaaagtagttatacaatgaggaatgttaagatgcaaatggaaactaacatgtgataatgcttccctagctaagct |
247 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||| |||||||| |||||||| ||| | |||||||||| || || |||||| || ||| || |
|
|
| T |
26678104 |
aagcttatagctttccattattgatcaaagtagaaatacaatgtggaatgttgcgataaatatggaaactagtattatatggtgcttctttatctagact |
26678203 |
T |
|
| Q |
248 |
atgggcaacaccattgacttgtctcccaataaaactcacatcagagtttactaaatcggtcatcaacaagggtctacaatcatgaattattgccatacaa |
347 |
Q |
| |
|
|||||||||||||||| ||||||||| ||| || | ||||| ||||| || ||| || ||| ||| |||||||||||| ||||||||||| || |
|
|
| T |
26678204 |
atgggcaacaccattggcttgtctcctaatgaactttacatccgagttcgttagatcagtttccaataagtgtctacaatcatttattattgccatgaaa |
26678303 |
T |
|
| Q |
348 |
tcagagaca |
356 |
Q |
| |
|
||||||||| |
|
|
| T |
26678304 |
tcagagaca |
26678312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 204
Target Start/End: Original strand, 32463341 - 32463407
Alignment:
| Q |
138 |
tgaagaaaggaagcttatagcttttcattattaatcaaagtagttatacaatgaggaatgttaagat |
204 |
Q |
| |
|
|||||||| |||||||||| |||||||||| |||||||||| |||||||||||| ||||||||| |
|
|
| T |
32463341 |
tgaagaaaataagcttataggttttcattatggatcaaagtagaaatacaatgaggagtgttaagat |
32463407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 137 - 385
Target Start/End: Complemental strand, 48207691 - 48207443
Alignment:
| Q |
137 |
ttgaagaaaggaagcttatagcttttcattattaatcaaagtagttatacaatgaggaatgttaagatgcaaatggaaactaacatgtgataatgcttcc |
236 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
48207691 |
ttgaaggaaggaagcttatagcttttcattattaatcaaagtagttatacaatgaggaatgttaagatgcaaatggaaactagcatgtgatagtgcttcc |
48207592 |
T |
|
| Q |
237 |
ctagctaagctatgggcaacaccattgacttgtctcccaataaaactcacatcagagtttactaaatcggtcatcaacaagggtctacaatcatgaatta |
336 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||| |
|
|
| T |
48207591 |
ctagctaaactatgggcaacaccattggcttgtctcctaataaaactcacatcagagtttactaagtcggtcatcaaaaagtgtctacaatcatgaatta |
48207492 |
T |
|
| Q |
337 |
ttgccatacaatcagagacaccatatcctttataaatgctatctgccac |
385 |
Q |
| |
|
|||||||| |||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
48207491 |
ttgccataaaatcagagtcaccatttcctttataaatgctatctgccac |
48207443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 50 - 126
Target Start/End: Complemental strand, 43154030 - 43153954
Alignment:
| Q |
50 |
attgcataatatttcgaaatgactattcaaattgaaaacacaacgagataaaacttctaaaaagatctcacacttgc |
126 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
43154030 |
attgaataatatttcggtatgactattcaaattgaaaacacaacgagagaaaacttctaaaaagatctcacacttgc |
43153954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 147 - 280
Target Start/End: Complemental strand, 5045653 - 5045520
Alignment:
| Q |
147 |
gaagcttatagcttttcattattaatcaaagtagttatacaatgaggaatgttaagatgcaaatggaaactaacatgtgataatgcttccctagctaagc |
246 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||||| ||||| |||||||| ||||||||||| |||| || |||||||||||||| |
|
|
| T |
5045653 |
gaagcttataacttttcattattaatcaaagtatgaatacaatgtggaatattaagatgataatggaaactagcatgatttagtgcttccctagctagat |
5045554 |
T |
|
| Q |
247 |
tatgggcaacaccattgacttgtctcccaataaa |
280 |
Q |
| |
|
|||||||||||| |||| ||||||||| |||||| |
|
|
| T |
5045553 |
tatgggcaacactattggcttgtctcctaataaa |
5045520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 36065883 - 36065828
Alignment:
| Q |
147 |
gaagcttatagcttttcattattaatcaaagtagttatacaatgaggaatgttaag |
202 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||| ||| |||| |||||||||| |
|
|
| T |
36065883 |
gaagcttataccttttcattattgatcaaagtagtaatataatgtagaatgttaag |
36065828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 201; Significance: 1e-109; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 137 - 385
Target Start/End: Complemental strand, 330372 - 330124
Alignment:
| Q |
137 |
ttgaagaaaggaagcttatagcttttcattattaatcaaagtagttatacaatgaggaatgttaagatgcaaatggaaactaacatgtgataatgcttcc |
236 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
330372 |
ttgaagaaaagaagcttatagtttttcattattaatcaaagtagttatacaatgaggaatgttaagatgcaaatggaaactagcatgtgatagtgcttcc |
330273 |
T |
|
| Q |
237 |
ctagctaagctatgggcaacaccattgacttgtctcccaataaaactcacatcagagtttactaaatcggtcatcaacaagggtctacaatcatgaatta |
336 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
330272 |
ctagctaaactatgggcaacaccattggcttgtctcctaataaaactcacatcagagtttactaagtcggtcatcaacaagtgtctacaatcatgaatta |
330173 |
T |
|
| Q |
337 |
ttgccatacaatcagagacaccatatcctttataaatgctatctgccac |
385 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
330172 |
ttgccataaaatcagagacaccatctcctttataaatgctatatgccac |
330124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 147 - 358
Target Start/End: Original strand, 13997160 - 13997371
Alignment:
| Q |
147 |
gaagcttatagcttttcattattaatcaaagtagttatacaatgaggaatgttaagatgcaaatggaaactaacatgtgataatgcttccctagctaagc |
246 |
Q |
| |
|
||||||||||||||||||||||| ||||||| | |||||||| |||||||||||||| | |||| |||| | || || ||||||| ||||||| | |
|
|
| T |
13997160 |
gaagcttatagcttttcattattgatcaaagaataaatacaatgtggaatgttaagatgaatgtggagactagcgtggtgtagtgcttccttagctaaac |
13997259 |
T |
|
| Q |
247 |
tatgggcaacaccattgacttgtctcccaataaaactcacatcagagtttactaaatcggtcatcaacaagggtctacaatcatgaattattgccataca |
346 |
Q |
| |
|
|||| |||||||||||||||||||||| ||| || | ||||||||||| ||||||||||| |||||||| |||||||||||| |||||||||||| | |
|
|
| T |
13997260 |
tatgagcaacaccattgacttgtctcctaatgaacttaacatcagagttcactaaatcggtactcaacaagtgtctacaatcattgattattgccataaa |
13997359 |
T |
|
| Q |
347 |
atcagagacacc |
358 |
Q |
| |
|
|||||||||||| |
|
|
| T |
13997360 |
atcagagacacc |
13997371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 137 - 203
Target Start/End: Original strand, 6816235 - 6816301
Alignment:
| Q |
137 |
ttgaagaaaggaagcttatagcttttcattattaatcaaagtagttatacaatgaggaatgttaaga |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6816235 |
ttgaagaaaggaagcttatagcttttcattattaatcaaagtagttatacaatgaggaatgttaaga |
6816301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 350
Target Start/End: Original strand, 34701233 - 34701401
Alignment:
| Q |
181 |
ttatacaatgaggaatgttaagatgcaaatggaaactaacatgtgataatgcttccctagctaagctatgggcaacaccattgacttgtctcccaataaa |
280 |
Q |
| |
|
||||| |||| ||||||||| |||| | ||||||||| |||| || |||| |||||||||| |||||||| | | |||| |||||| | ||| || |
|
|
| T |
34701233 |
ttataaaatgtggaatgttatgatgaacttggaaactagcatgatttagtgct-ccctagctaaactatgggcggctctattggtttgtcttctaatgaa |
34701331 |
T |
|
| Q |
281 |
actcacatcagagtttactaaatcggtcatcaacaagggtctacaatcatgaattattgccatacaatca |
350 |
Q |
| |
|
||| ||||||||| |||||||| || |||||||| ||||||||||| ||||||| |||||| ||||| |
|
|
| T |
34701332 |
cttcaaatcagagttcactaaatcaatcgtcaacaagtgtctacaatcacgaattatagccataaaatca |
34701401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 147 - 190
Target Start/End: Original strand, 34701073 - 34701116
Alignment:
| Q |
147 |
gaagcttatagcttttcattattaatcaaagtagttatacaatg |
190 |
Q |
| |
|
|||||||||| ||||| |||||| |||||||||||||||||||| |
|
|
| T |
34701073 |
gaagcttataactttttattatttatcaaagtagttatacaatg |
34701116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 181; Significance: 1e-97; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 137 - 385
Target Start/End: Original strand, 33737445 - 33737693
Alignment:
| Q |
137 |
ttgaagaaaggaagcttatagcttttcattattaatcaaagtagttatacaatgaggaatgttaagatgcaaatggaaactaacatgtgataatgcttcc |
236 |
Q |
| |
|
|||||| || || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
33737445 |
ttgaaggaaagaggcttatagcctttcattattaatcaaagtagttatacaatgaggaatgttaagatgcaaatggaaactagcatgtgatagcgcttcc |
33737544 |
T |
|
| Q |
237 |
ctagctaagctatgggcaacaccattgacttgtctcccaataaaactcacatcagagtttactaaatcggtcatcaacaagggtctacaatcatgaatta |
336 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
33737545 |
ctagctaaactatgggcaacaccattggcttgtctcctaatgaaactcacatcagagtttactaaatcggtcatcaacaagtgtctacaatcttgaatta |
33737644 |
T |
|
| Q |
337 |
ttgccatacaatcagagacaccatatcctttataaatgctatctgccac |
385 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
33737645 |
ttgccataaaatcagagacaccatttcctttataaacactatctgccac |
33737693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 141 - 381
Target Start/End: Complemental strand, 14586018 - 14585778
Alignment:
| Q |
141 |
agaaaggaagcttatagcttttcattattaatcaaagtagttatacaatgaggaatgttaagatgcaaatggaaactaacatgtgataatgcttccctag |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||| || ||||||||| ||||||||||||||||||||| |
|
|
| T |
14586018 |
agaaaggaagcttatagcttttcattattaatcaaactagttatacaatgtggaatattaagatataattggaaactagcatgtgataatgcttccctag |
14585919 |
T |
|
| Q |
241 |
ctaagctatgggcaacaccattgacttgtctcccaataaaactcacatcagagtttactaaatcggtcatcaacaagggtctacaatcatgaattattgc |
340 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||| ||||||| |||||||||||||| |||| ||||||||||||||| || ||||||||||||| ||||| |
|
|
| T |
14585918 |
ctaaactatgggcaacaccattggcttgtctcctaataaaattcacatcagagtttgctaagtcggtcatcaacaagtgtttacaatcatgaataattgc |
14585819 |
T |
|
| Q |
341 |
catacaatcagagacaccatatcctttataaatgctatctg |
381 |
Q |
| |
|
|||| ||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
14585818 |
cataaaatcagagacaccatctccttcataaatgctatctg |
14585778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 147 - 358
Target Start/End: Complemental strand, 35322510 - 35322299
Alignment:
| Q |
147 |
gaagcttatagcttttcattattaatcaaagtagttatacaatgaggaatgttaagatgcaaatggaaactaacatgtgataatgcttccctagctaagc |
246 |
Q |
| |
|
||||||||||||||||||||||| ||||||| || |||||||| |||||||||||||| | |||| |||| | || || ||||||| ||||||| | |
|
|
| T |
35322510 |
gaagcttatagcttttcattattgatcaaagaagaaatacaatgtggaatgttaagatgaatgtggagactagcgtggtgtagtgcttccttagctaaac |
35322411 |
T |
|
| Q |
247 |
tatgggcaacaccattgacttgtctcccaataaaactcacatcagagtttactaaatcggtcatcaacaagggtctacaatcatgaattattgccataca |
346 |
Q |
| |
|
|||| |||||||||||||||||||||| ||| || ||||||||||||| ||||||||||| |||||||| |||||||||||| ||||||||||| | |
|
|
| T |
35322410 |
tatgagcaacaccattgacttgtctcctaatgaacttcacatcagagttcactaaatcggtactcaacaagtgtctacaatcattgattattgccatgaa |
35322311 |
T |
|
| Q |
347 |
atcagagacacc |
358 |
Q |
| |
|
|||||||||||| |
|
|
| T |
35322310 |
atcagagacacc |
35322299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 147 - 360
Target Start/End: Original strand, 45274243 - 45274456
Alignment:
| Q |
147 |
gaagcttatagcttttcattattaatcaaagtagttatacaatgaggaatgttaagatgcaaatggaaactaacatgtgataatgcttccctagctaagc |
246 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||| ||||| |||||||| ||||||||||| |||| || |||||||||||||| |
|
|
| T |
45274243 |
gaagcttatagcttttcattattaattaaagtatgaatacaatgtggaatattaagatgataatggaaactagcatgatttagtgcttccctagctagat |
45274342 |
T |
|
| Q |
247 |
tatgggcaacaccattgacttgtctcccaataaaactcacatcagagtttactaaatcggtcatcaacaagggtctacaatcatgaattattgccataca |
346 |
Q |
| |
|
|||| ||| ||| |||| ||||||||| ||| || ||||||||||||| ||||||| ||||| || | |||||||||| || ||||| ||||| | |
|
|
| T |
45274343 |
tatgagcagcactattggcttgtctcctaatgaacttcacatcagagttcgctaaatcagtcattaaaagatgtctacaatcgtgtattatggccatgaa |
45274442 |
T |
|
| Q |
347 |
atcagagacaccat |
360 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
45274443 |
atctgagacaccat |
45274456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 358
Target Start/End: Complemental strand, 6663242 - 6663117
Alignment:
| Q |
233 |
ttccctagctaagctatgggcaacaccattgacttgtctcccaataaaactcacatcagagtttactaaatcggtcatcaacaagggtctacaatcatga |
332 |
Q |
| |
|
||||||| |||| ||||||||||||| ||| | |||| ||| |||||| |||||||||||||| ||||||| |||||||| || |||||| |||| | |
|
|
| T |
6663242 |
ttccctaactaaactatgggcaacactattaaattgtatcctaataaacttcacatcagagtttgctaaatcaatcatcaacgagtgtctacggtcataa |
6663143 |
T |
|
| Q |
333 |
attattgccatacaatcagagacacc |
358 |
Q |
| |
|
||||| ||| | |||||||| |||| |
|
|
| T |
6663142 |
attatatccacaaaatcagaggcacc |
6663117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 178
Target Start/End: Complemental strand, 3215207 - 3215178
Alignment:
| Q |
149 |
agcttatagcttttcattattaatcaaagt |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
3215207 |
agcttatagcttttcattattaatcaaagt |
3215178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 200
Target Start/End: Complemental strand, 45182442 - 45182394
Alignment:
| Q |
152 |
ttatagcttttcattattaatcaaagtagttatacaatgaggaatgtta |
200 |
Q |
| |
|
|||||| ||||||||||| ||||||||||| ||||||| ||||||||| |
|
|
| T |
45182442 |
ttatagtttttcattattgatcaaagtagtaatacaatatggaatgtta |
45182394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 180; Significance: 4e-97; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 150 - 385
Target Start/End: Original strand, 36480759 - 36480994
Alignment:
| Q |
150 |
gcttatagcttttcattattaatcaaagtagttatacaatgaggaatgttaagatgcaaatggaaactaacatgtgataatgcttccctagctaagctat |
249 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||| |
|
|
| T |
36480759 |
gcttatagcctttcattattaatcaaagtagttatacaatgaggaatgttaagatgcaaatggaaactagcatgtgatagcgcttccctagctaaactat |
36480858 |
T |
|
| Q |
250 |
gggcaacaccattgacttgtctcccaataaaactcacatcagagtttactaaatcggtcatcaacaagggtctacaatcatgaattattgccatacaatc |
349 |
Q |
| |
|
|||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||| |
|
|
| T |
36480859 |
gggcaacaccattggcttgtctcctaatgaaactcacatcagagtttactaaatcggtcatcaacaagtgtctacaatcttgaattattgccataaaatc |
36480958 |
T |
|
| Q |
350 |
agagacaccatatcctttataaatgctatctgccac |
385 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
36480959 |
agagacaccatttcctttataaacactatctgccac |
36480994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 144 - 333
Target Start/End: Complemental strand, 48255147 - 48254958
Alignment:
| Q |
144 |
aaggaagcttatagcttttcattattaatcaaagtagttatacaatgaggaatgttaagatgcaaatggaaactaacatgtgataatgcttccctagcta |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||| |
|
|
| T |
48255147 |
aaggaagcttatagcttttcattattaatcaaagtagttatacaatgaggaatgttaagatgcaaatggaaactagcatgtgatagtgcttccctaacta |
48255048 |
T |
|
| Q |
244 |
agctatgggcaacaccattgacttgtctcccaataaaactcacatcagagtttactaaatcggtcatcaacaagggtctacaatcatgaa |
333 |
Q |
| |
|
| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
48255047 |
aactatgggcaacaccattggcttgtctcctaataaaactcacatcagagtttactaaatcggtcatcaacaaatgtctacgatcatgaa |
48254958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 147 - 358
Target Start/End: Complemental strand, 6682937 - 6682726
Alignment:
| Q |
147 |
gaagcttatagcttttcattattaatcaaagtagttatacaatgaggaatgttaagatgcaaatggaaactaacatgtgataatgcttccctagctaagc |
246 |
Q |
| |
|
||||||||||||||||||||||| ||||||| || |||||||| |||||||||||||| | |||| |||| | || || ||||||| ||||||| | |
|
|
| T |
6682937 |
gaagcttatagcttttcattattgatcaaagaagaaatacaatgtggaatgttaagatgaatgtggagactagcgtggtgtagtgcttccttagctaaac |
6682838 |
T |
|
| Q |
247 |
tatgggcaacaccattgacttgtctcccaataaaactcacatcagagtttactaaatcggtcatcaacaagggtctacaatcatgaattattgccataca |
346 |
Q |
| |
|
|||| |||||||||||||||||||||| ||| || | ||||||||||| ||||||||||| |||||||| |||||||||||| |||||||||||| | |
|
|
| T |
6682837 |
tatgagcaacaccattgacttgtctcctaatgaactttacatcagagttcactaaatcggtactcaacaagtgtctacaatcattgattattgccataaa |
6682738 |
T |
|
| Q |
347 |
atcagagacacc |
358 |
Q |
| |
|
|||||||||||| |
|
|
| T |
6682737 |
atcagagacacc |
6682726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 147 - 388
Target Start/End: Original strand, 36220727 - 36220968
Alignment:
| Q |
147 |
gaagcttatagcttttcattattaatcaaagtagttatacaatgaggaatgttaagatgcaaatggaaactaacatgtgataatgcttccctagctaagc |
246 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||| ||||||||||| |||| || |||||||||||||| |
|
|
| T |
36220727 |
gaagcttatagcttttcattattaatcaaagtatgaatacaatgtggaatattaagatgataatggaaactagcatgatttagtgcttccctagctagat |
36220826 |
T |
|
| Q |
247 |
tatgggcaacaccattgacttgtctcccaataaaactcacatcagagtttactaaatcggtcatcaacaagggtctacaatcatgaattattgccataca |
346 |
Q |
| |
|
||||||||| || |||| ||||||||| ||| | ||||||||||||| ||||||| ||||| || | |||||||||| || ||||| ||||| | |
|
|
| T |
36220827 |
tatgggcaatactattggcttgtctcctaatggacttcacatcagagttcgctaaatcagtcattaatagatgtctacaatcgtgtattatggccatgaa |
36220926 |
T |
|
| Q |
347 |
atcagagacaccatatcctttataaatgctatctgccaccac |
388 |
Q |
| |
|
||| |||||||||| || ||||| || | ||||||||||| |
|
|
| T |
36220927 |
atctgagacaccatcccccttatagatattctctgccaccac |
36220968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 160 - 360
Target Start/End: Complemental strand, 12904249 - 12904049
Alignment:
| Q |
160 |
tttcattattaatcaaagtagttatacaatgaggaatgttaagatgcaaatggaaactaacatgtgataatgcttccctagctaagctatgggcaacacc |
259 |
Q |
| |
|
|||||||||||||||||||| |||| |||| ||||| |||||||| ||||||||||| ||| || ||||||||||| || ||| |||||||| |
|
|
| T |
12904249 |
tttcattattaatcaaagtatgtatagaatgtggaatattaagatgataatggaaactaggatgatttagtgcttccctagttagattataggcaacact |
12904150 |
T |
|
| Q |
260 |
attgacttgtctcccaataaaactcacatcagagtttactaaatcggtcatcaacaagggtctacaatcatgaattattgccatacaatcagagacacca |
359 |
Q |
| |
|
|||| ||||||||| ||| || |||||| ||||| ||||||| ||||| || | | |||||||||| || ||||| ||||| ||| ||||||||| |
|
|
| T |
12904149 |
attggcttgtctcctaatgaacttcacatatgagttcgctaaatcagtcattaataggtgtctacaatcgtgtattatggccatgaaatttgagacacca |
12904050 |
T |
|
| Q |
360 |
t |
360 |
Q |
| |
|
| |
|
|
| T |
12904049 |
t |
12904049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 160 - 388
Target Start/End: Original strand, 12701957 - 12702185
Alignment:
| Q |
160 |
tttcattattaatcaaagtagttatacaatgaggaatgttaagatgcaaatggaaactaacatgtgataatgcttccctagctaagctatgggcaacacc |
259 |
Q |
| |
|
|||||||||||||||||||| |||| |||| ||||| ||| |||| ||||||||||| ||| || ||||||||||| || ||| ||||| || |
|
|
| T |
12701957 |
tttcattattaatcaaagtatgtatagaatgtggaatattaggatgataatggaaactaggatgatttagtgcttccctagttagattataggcaaaact |
12702056 |
T |
|
| Q |
260 |
attgacttgtctcccaataaaactcacatcagagtttactaaatcggtcatcaacaagggtctacaatcatgaattattgccatacaatcagagacacca |
359 |
Q |
| |
|
|||| |||||||| ||| || ||||||||||||| ||||||| ||||| || | | |||||||||| || ||||| ||||| ||| ||||| ||| |
|
|
| T |
12702057 |
attggtttgtctcctaatgaacttcacatcagagttcgctaaatcagtcattaataggtgtctacaatcgtgtattatggccatgaaatttgagacccca |
12702156 |
T |
|
| Q |
360 |
tatcctttataaatgctatctgccaccac |
388 |
Q |
| |
|
| ||| ||||| || || ||||| ||||| |
|
|
| T |
12702157 |
tctcccttatagatactttctgctaccac |
12702185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 234 - 358
Target Start/End: Original strand, 33037137 - 33037261
Alignment:
| Q |
234 |
tccctagctaagctatgggcaacaccattgacttgtctcccaataaaactcacatcagagtttactaaatcggtcatcaacaagggtctacaatcatgaa |
333 |
Q |
| |
|
||||||||||| ||||||||||||| |||| |||||||| |||||| |||||||||||||| ||||| ||||| |||| ||||||||| || | |
|
|
| T |
33037137 |
tccctagctaaactatgggcaacactattggtttgtctcctaataaacttcacatcagagtttgttaaattagtcattaacagatgtctacaattgtgta |
33037236 |
T |
|
| Q |
334 |
ttattgccatacaatcagagacacc |
358 |
Q |
| |
|
|||| | ||| ||||||||||||| |
|
|
| T |
33037237 |
ttatggtcatgaaatcagagacacc |
33037261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 231 - 358
Target Start/End: Complemental strand, 22585852 - 22585725
Alignment:
| Q |
231 |
gcttccctagctaagctatgggcaacaccattgacttgtctcccaataaaactcacatcagagtttactaaatcggtcatcaacaagggtctacaatcat |
330 |
Q |
| |
|
|||||| ||||||| ||||| |||||||| |||| |||||| ||| || |||||| |||| || |||||||||| |||||||| | ||||||| | |
|
|
| T |
22585852 |
gcttccttagctaaattatggacaacaccactgacctgtctcataatgaatttcacataagagcttgctaaatcggtaatcaacaaatatttacaatcct |
22585753 |
T |
|
| Q |
331 |
gaattattgccatacaatcagagacacc |
358 |
Q |
| |
|
||||||||||||| || || ||||||| |
|
|
| T |
22585752 |
taattattgccataaaaccaaagacacc |
22585725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0570 (Bit Score: 156; Significance: 9e-83; HSPs: 1)
Name: scaffold0570
Description:
Target: scaffold0570; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 137 - 385
Target Start/End: Original strand, 4826 - 5070
Alignment:
| Q |
137 |
ttgaagaaaggaagcttatagcttttcattattaatcaaagtagttatacaatgaggaatgttaagatgcaaatggaaactaacatgtgataatgcttcc |
236 |
Q |
| |
|
|||||| || || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | || |
|
|
| T |
4826 |
ttgaaggaaagaggcttatagcctttcattattaatcaaagtagttatacaatgaggaatgttaagatgcaaatggaaactagcatgtgatagcgttt-- |
4923 |
T |
|
| Q |
237 |
ctagctaagctatgggcaacaccattgacttgtctcccaataaaactcacatcagagtttactaaatcggtcatcaacaagggtctacaatcatgaatta |
336 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||| | ||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
4924 |
--agctaaactatgggcaacaccattggcttgtcttctaatgaaactcacatcagagtttactaaatcggtcatcaacaagtgtctacaatcttgaatta |
5021 |
T |
|
| Q |
337 |
ttgccatacaatcagagacaccatatcctttataaatgctatctgccac |
385 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
5022 |
ttgccataaaatcagagacaccatttcctttataaacactatctgccac |
5070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 128; Significance: 5e-66; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 143 - 362
Target Start/End: Complemental strand, 10982 - 10763
Alignment:
| Q |
143 |
aaaggaagcttatagcttttcattattaatcaaagtagttatacaatgaggaatgttaagatgcaaatggaaactaacatgtgataatgcttccctagct |
242 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||||||||||||| ||||| |||| || || ||||||||| ||||||||||||||||| ||||| |
|
|
| T |
10982 |
aaaggaattttattgcttttcattattaatcaaagtagttatacaatgtggaatattaaaatataattggaaactagcatgtgataatgcttccttagct |
10883 |
T |
|
| Q |
243 |
aagctatgggcaacaccattgacttgtctcccaataaaactcacatcagagtttactaaatcggtcatcaacaagggtctacaatcatgaattattgcca |
342 |
Q |
| |
|
|| ||||||||||||| |||| ||||||||| ||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||| || |||| || |
|
|
| T |
10882 |
aaactatgggcaacacgattggcttgtctcctaattaaactcacatcagagtttgttaaatcggtcatcaacaagtgtctacaatcatggataattggca |
10783 |
T |
|
| Q |
343 |
tacaatcagagacaccatat |
362 |
Q |
| |
|
|| ||||||||||||||||| |
|
|
| T |
10782 |
taaaatcagagacaccatat |
10763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 147 - 358
Target Start/End: Original strand, 33304933 - 33305144
Alignment:
| Q |
147 |
gaagcttatagcttttcattattaatcaaagtagttatacaatgaggaatgttaagatgcaaatggaaactaacatgtgataatgcttccctagctaagc |
246 |
Q |
| |
|
||||||||||||||||||||||| ||||||| || |||||||| |||||||||||||| | |||| |||| | || || ||||||| ||||||| | |
|
|
| T |
33304933 |
gaagcttatagcttttcattattgatcaaagaagaaatacaatgtggaatgttaagatgaatgtggagactagcgtggtgtagtgcttccttagctaaac |
33305032 |
T |
|
| Q |
247 |
tatgggcaacaccattgacttgtctcccaataaaactcacatcagagtttactaaatcggtcatcaacaagggtctacaatcatgaattattgccataca |
346 |
Q |
| |
|
|||| |||||||||||||||||||||| ||| || ||||||||||||| ||||||||||| |||||||| |||||||||||| ||||||||||| | |
|
|
| T |
33305033 |
tatgagcaacaccattgacttgtctcctaatgaacttcacatcagagttcactaaatcggtactcaacaagtgtctacaatcattgattattgccatgaa |
33305132 |
T |
|
| Q |
347 |
atcagagacacc |
358 |
Q |
| |
|
|||||||||||| |
|
|
| T |
33305133 |
atcagagacacc |
33305144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 147 - 356
Target Start/End: Complemental strand, 18678674 - 18678465
Alignment:
| Q |
147 |
gaagcttatagcttttcattattaatcaaagtagttatacaatgaggaatgttaagatgcaaatggaaactaacatgtgataatgcttccctagctaagc |
246 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||| | ||||||||||| | ||||| |||| ||| ||| || |||| ||||||| | |
|
|
| T |
18678674 |
gaagcttatagcttttcattattaattgaagtagaaatacaatgtaggatgttaagatgaacatggagactagcattgtatagtgattccttagctaaac |
18678575 |
T |
|
| Q |
247 |
tatgggcaacaccattgacttgtctcccaataaaactcacatcagagtttactaaatcggtcatcaacaagggtctacaatcatgaattattgccataca |
346 |
Q |
| |
|
|||| ||||||| |||| ||||||||| ||| |||||||||| |||||||||||||||||| ||||| |||||||||||| |||||||||||| | |
|
|
| T |
18678574 |
tatgagcaacactattggcttgtctcctaatgaaactcacattagagtttactaaatcggtacctaacaaatgtctacaatcattaattattgccatgaa |
18678475 |
T |
|
| Q |
347 |
atcagagaca |
356 |
Q |
| |
|
|||||||||| |
|
|
| T |
18678474 |
atcagagaca |
18678465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 148 - 388
Target Start/End: Original strand, 22697557 - 22697797
Alignment:
| Q |
148 |
aagcttatagcttttcattattaatcaaagtagttatacaatgaggaatgttaagatgcaaatggaaactaacatgtgataatgcttccctagctaagct |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| ||||| |||||||| ||||||||||| |||| || |||||||||||||| | |
|
|
| T |
22697557 |
aagcttatagcttttcattattaatcaaagtatgaatacaatgtggaatattaagatgataatggaaactagcatgatttagtgcttccctagctagatt |
22697656 |
T |
|
| Q |
248 |
atgggcaacaccattgacttgtctcccaataaaactcacatcagagtttactaaatcggtcatcaacaagggtctacaatcatgaattattgccatacaa |
347 |
Q |
| |
|
||||||||||| |||| ||||||||| ||| || ||||||||||||| ||||||| ||||| || | |||||||||| || ||||| ||||| || |
|
|
| T |
22697657 |
atgggcaacactattggcttgtctcctaatgaacttcacatcagagttcgctaaatcagtcattaatagatgtctacaatcgtgtattatggccatgaaa |
22697756 |
T |
|
| Q |
348 |
tcagagacaccatatcctttataaatgctatctgccaccac |
388 |
Q |
| |
|
|| |||||||||| || ||||| || | ||||||||||| |
|
|
| T |
22697757 |
tctgagacaccatcccccttatagatattctctgccaccac |
22697797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 147 - 360
Target Start/End: Complemental strand, 31089607 - 31089394
Alignment:
| Q |
147 |
gaagcttatagcttttcattattaatcaaagtagttatacaatgaggaatgttaagatgcaaatggaaactaacatgtgataatgcttccctagctaagc |
246 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||| ||||| |||||||| ||||||||||| |||| || |||||||||||||| |
|
|
| T |
31089607 |
gaagcttatagcttttcattattaattaaagtatgaatacaatgtggaatattaagatgataatggaaactagcatgatttagtgcttccctagctagat |
31089508 |
T |
|
| Q |
247 |
tatgggcaacaccattgacttgtctcccaataaaactcacatcagagtttactaaatcggtcatcaacaagggtctacaatcatgaattattgccataca |
346 |
Q |
| |
|
|||||||| ||| |||| ||||||||| ||| || ||||||||||||| ||||||| ||||| || | |||||||||| || ||||| ||||| | |
|
|
| T |
31089507 |
tatgggcagcactattggcttgtctcctaatgaacttcacatcagagttcgctaaatcagtcattaaaagatgtctacaatcgtgtattatggccatgaa |
31089408 |
T |
|
| Q |
347 |
atcagagacaccat |
360 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
31089407 |
atctgagacaccat |
31089394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 147 - 359
Target Start/End: Complemental strand, 20864172 - 20863963
Alignment:
| Q |
147 |
gaagcttatagcttttcattattaatcaaagtagttatacaatgaggaatgttaagatgcaaatggaaactaacatgtgataatgcttccctagctaagc |
246 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| |||| ||||||| | || || |||||| || ||| |||||| |||||||||| || |
|
|
| T |
20864172 |
gaagcttatagcttttcattattaatcaaagtatgaatagaatgtggaatgtaatga---aattggaaaatagcattatgtaatgcctccctagctatgc |
20864076 |
T |
|
| Q |
247 |
tatgggcaacaccattgacttgtctcccaataaaactcacatcagagtttactaaatcggtcatcaacaagggtctacaatcatgaattattgccataca |
346 |
Q |
| |
|
|||| ||||||| ||| ||||||| | |||||| ||| || |||||| ||||| |||||||||||| || |||||||||||||||| ||||| | |
|
|
| T |
20864075 |
tatgagcaacactgttggcttgtcttctaataaacttcatattggagtttgttaaattagtcatcaacaagtgtttacaatcatgaattatagccatgaa |
20863976 |
T |
|
| Q |
347 |
atcagagacacca |
359 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
20863975 |
atcagagatacca |
20863963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 147 - 360
Target Start/End: Complemental strand, 24442746 - 24442533
Alignment:
| Q |
147 |
gaagcttatagcttttcattattaatcaaagtagttatacaatgaggaatgttaagatgcaaatggaaactaacatgtgataatgcttccctagctaagc |
246 |
Q |
| |
|
||||||||||| |||| |||||||||||||||| |||||||| |||| |||||||| ||||||||||| |||| || |||||| ||||||| |
|
|
| T |
24442746 |
gaagcttatagtttttaattattaatcaaagtatgaatacaatgtagaatattaagatgataatggaaactagcatgatttagtgcttctctagctagat |
24442647 |
T |
|
| Q |
247 |
tatgggcaacaccattgacttgtctcccaataaaactcacatcagagtttactaaatcggtcatcaacaagggtctacaatcatgaattattgccataca |
346 |
Q |
| |
|
|||||||||||| |||| |||||||| ||| || ||||||||||||| ||||||| ||||| || | |||||||||| || ||||| ||||| | |
|
|
| T |
24442646 |
tatgggcaacactattggtttgtctcctaatgaacttcacatcagagttcgctaaatcagtcattaatagatgtctacaatcgtgtattatggccatgaa |
24442547 |
T |
|
| Q |
347 |
atcagagacaccat |
360 |
Q |
| |
|
||| || ||||||| |
|
|
| T |
24442546 |
atctgatacaccat |
24442533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 148 - 373
Target Start/End: Complemental strand, 39648432 - 39648207
Alignment:
| Q |
148 |
aagcttatagcttttcattattaatcaaagtagttatacaatgaggaatgttaagatgcaaatggaaactaacatgtgataatgcttccctagctaagct |
247 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||||||| |||| ||||||||| | | ||||||| ||| ||| ||||||| ||||||| || |
|
|
| T |
39648432 |
aagcttatagcttttctttattaatcaaagaagttatacaatgtagaatattaagatgctactcgaaactagcataatatagtgcttccttagctaaact |
39648333 |
T |
|
| Q |
248 |
atgggcaacaccattgacttgtctcccaataaaactcacatcagagtttactaaatcggtcatcaacaagggtctacaatcatgaattattgccatacaa |
347 |
Q |
| |
|
||||||||||| |||| | |||||| || || ||||||| ||||| ||||||| |||||||||||| ||||||||||||||||||| |||||| || |
|
|
| T |
39648332 |
atgggcaacactattggcctgtctcttgatgaacttcacatctgagttcgctaaatcagtcatcaacaagtgtctacaatcatgaattatggccataaaa |
39648233 |
T |
|
| Q |
348 |
tcagagacaccatatcctttataaat |
373 |
Q |
| |
|
||||||||||||| ||||| ||||| |
|
|
| T |
39648232 |
tcagagacaccatcccctttgtaaat |
39648207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 147 - 360
Target Start/End: Complemental strand, 26423399 - 26423186
Alignment:
| Q |
147 |
gaagcttatagcttttcattattaatcaaagtagttatacaatgaggaatgttaagatgcaaatggaaactaacatgtgataatgcttccctagctaagc |
246 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| | ||||| |||||||| ||||||||||| |||| || |||||||||||||| |
|
|
| T |
26423399 |
gaagcttatagcttttcattattaatcaaagtatgaatacaacgtggaatattaagatgataatggaaactagcatgatttagtgcttccctagctagat |
26423300 |
T |
|
| Q |
247 |
tatgggcaacaccattgacttgtctcccaataaaactcacatcagagtttactaaatcggtcatcaacaagggtctacaatcatgaattattgccataca |
346 |
Q |
| |
|
|||||||||||| |||| ||||||||| ||| || ||||||||||||| |||||||| ||||| || | |||||||||| || ||||| |||| | |
|
|
| T |
26423299 |
tatgggcaacactattggcttgtctcctaatgaacttcacatcagagttcactaaatcagtcattaatagatgtctacaatcgtgtattatgaccatgaa |
26423200 |
T |
|
| Q |
347 |
atcagagacaccat |
360 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
26423199 |
atctgagacaccat |
26423186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 147 - 360
Target Start/End: Complemental strand, 12997432 - 12997219
Alignment:
| Q |
147 |
gaagcttatagcttttcattattaatcaaagtagttatacaatgaggaatgttaagatgcaaatggaaactaacatgtgataatgcttccctagctaagc |
246 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||| ||||| |||||||| ||||||||||| |||| || |||||||||||||| |
|
|
| T |
12997432 |
gaagcttatagcttttcattattaattaaagtatgaatacaatgtggaatattaagatgataatggaaactagcatgatttagtgcttccctagctagat |
12997333 |
T |
|
| Q |
247 |
tatgggcaacaccattgacttgtctcccaataaaactcacatcagagtttactaaatcggtcatcaacaagggtctacaatcatgaattattgccataca |
346 |
Q |
| |
|
|||||||| ||| |||| ||||||||| ||| || ||||||||||||| ||||||| ||||| || | |||||||||| || ||||| ||||| | |
|
|
| T |
12997332 |
tatgggcagcactattggcttgtctcctaatgaacttcacatcagagttcgctaaatcagtcattaaaagatgtctacaatcgtgtattatggccatgaa |
12997233 |
T |
|
| Q |
347 |
atcagagacaccat |
360 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
12997232 |
atctgagacaccat |
12997219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 241 - 359
Target Start/End: Complemental strand, 17902948 - 17902830
Alignment:
| Q |
241 |
ctaagctatgggcaacaccattgacttgtctcccaataaaactcacatcagagtttactaaatcggtcatcaacaagggtctacaatcatgaattattgc |
340 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||| ||||||| |||| | |||||| || |||||| |||||||||||| |||||||| |
|
|
| T |
17902948 |
ctaaactatgggcaacaccattgacttgtctcctaataaacttcacatccaagttcattaaatcagtttctaacaagtgtctacaatcattgattattgc |
17902849 |
T |
|
| Q |
341 |
catacaatcagagacacca |
359 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
17902848 |
catgaaatcagagacacca |
17902830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 234 - 356
Target Start/End: Original strand, 26999250 - 26999372
Alignment:
| Q |
234 |
tccctagctaagctatgggcaacaccattgacttgtctcccaataaaactcacatcagagtttactaaatcggtcatcaacaagggtctacaatcatgaa |
333 |
Q |
| |
|
||||||||||| |||||||| | | |||| ||||||| | ||| || ||| ||||||||| |||||||| ||||||||||| ||||||||||| ||| |
|
|
| T |
26999250 |
tccctagctaaactatgggcggctctattggcttgtcttctaatgaacttcaaatcagagttcactaaatcaatcatcaacaagtgtctacaatcacgaa |
26999349 |
T |
|
| Q |
334 |
ttattgccatacaatcagagaca |
356 |
Q |
| |
|
|||| |||||| ||||| ||||| |
|
|
| T |
26999350 |
ttatagccataaaatcatagaca |
26999372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 360
Target Start/End: Complemental strand, 6334097 - 6334022
Alignment:
| Q |
285 |
acatcagagtttactaaatcggtcatcaacaagggtctacaatcatgaattattgccatacaatcagagacaccat |
360 |
Q |
| |
|
||||||||||| |||||||| |||||| | || ||||| ||||||||||||| |||||| ||||| ||||||||| |
|
|
| T |
6334097 |
acatcagagttcactaaatcagtcatccataaatgtctaaaatcatgaattatagccataaaatcaaagacaccat |
6334022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 147 - 196
Target Start/End: Original strand, 26999036 - 26999085
Alignment:
| Q |
147 |
gaagcttatagcttttcattattaatcaaagtagttatacaatgaggaat |
196 |
Q |
| |
|
|||||||||| ||||| |||||| |||||||||||||||||||| ||||| |
|
|
| T |
26999036 |
gaagcttataactttttattatttatcaaagtagttatacaatgtggaat |
26999085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 178
Target Start/End: Original strand, 14150242 - 14150271
Alignment:
| Q |
149 |
agcttatagcttttcattattaatcaaagt |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
14150242 |
agcttatagcttttcattattaatcaaagt |
14150271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 147 - 360
Target Start/End: Original strand, 17904654 - 17904867
Alignment:
| Q |
147 |
gaagcttatagcttttcattattaatcaaagtagttatacaatgaggaatgttaagatgcaaatggaaactaacatgtgataatgcttccctagctaagc |
246 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| ||||| ||| |||| ||||||||||| |||| || || ||||||||||| |
|
|
| T |
17904654 |
gaagcttatagcttttcattattaatcaaagtatgtatacaatgtggaatattaggatgataatggaaactagcatgatttagtgtttccctagctagat |
17904753 |
T |
|
| Q |
247 |
tatgggcaacaccattgacttgtctcccaataaaactcacatcagagtttactaaatcggtcatcaacaagggtctacaatcatgaattattgccataca |
346 |
Q |
| |
|
|||||||||||| |||| ||||||||| ||| || ||||||||||||| ||||||| ||||| || | | |||||||||| | ||||| ||||| | |
|
|
| T |
17904754 |
tatgggcaacactattggcttgtctcctaatgaacttcacatcagagttcgctaaatcagtcattaataggtgtctacaatcgtatattatggccatgaa |
17904853 |
T |
|
| Q |
347 |
atcagagacaccat |
360 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
17904854 |
atctgagacaccat |
17904867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0233 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0233
Description:
Target: scaffold0233; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 147 - 360
Target Start/End: Original strand, 19250 - 19464
Alignment:
| Q |
147 |
gaagcttatagcttttcattattaatcaaagtagttatacaatgaggaatgttaagatgcaaatggaaactaacatgtgataatgcttccctagctaagc |
246 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||||| ||||| |||||||| | |||| |||| || | ||||||| ||| ||| | |
|
|
| T |
19250 |
gaagcttatagcttttcattattgatcaaagtaggaatacaatgtggaatattaagatgaatgtggagactagtgtggtgttgtgcttccttagttaaac |
19349 |
T |
|
| Q |
247 |
tatgggcaacaccattgacttgtctcccaataaaactcacatcagagttt-actaaatcggtcatcaacaagggtctacaatcatgaattattgccatac |
345 |
Q |
| |
|
||| |||||||||||||||||||||| ||| || |||||||||||||| |||||||| || |||||||| |||||||||||| ||||||||||| |
|
|
| T |
19350 |
tataagcaacaccattgacttgtctcctaatgaacttcacatcagagtttcactaaatcagtattcaacaagtgtctacaatcatttattattgccatga |
19449 |
T |
|
| Q |
346 |
aatcagagacaccat |
360 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
19450 |
aatcaaagacaccat |
19464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1476 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold1476
Description:
Target: scaffold1476; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 147 - 307
Target Start/End: Original strand, 1238 - 1398
Alignment:
| Q |
147 |
gaagcttatagcttttcattattaatcaaagtagttatacaatgaggaatgttaagatgcaaatggaaactaacatgtgataatgcttccctagctaagc |
246 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||||||| ||||||||| |||| | |||| |||| |||| ||| ||||| | ||||||| | |
|
|
| T |
1238 |
gaagtttatagcttttcattattaatcaaagtagaaatacaatgtggaatgttacgatgaatttggagactagcatggtatagtgcttgcttagctaaac |
1337 |
T |
|
| Q |
247 |
tatgggcaacaccattgacttgtctcccaataaaactcacatcagagtttactaaatcggt |
307 |
Q |
| |
|
|||| || |||||||||||| ||||| || ||||||||||| ||||| |||||||||||| |
|
|
| T |
1338 |
tatgaacagcaccattgacttctctccgaacaaaactcacattagagtgtactaaatcggt |
1398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0112 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0112
Description:
Target: scaffold0112; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 230 - 358
Target Start/End: Complemental strand, 24025 - 23897
Alignment:
| Q |
230 |
tgcttccctagctaagctatgggcaacaccattgacttgtctcccaataaaactcacatcagagtttactaaatcggtcatcaacaagggtctacaatca |
329 |
Q |
| |
|
||||||| || |||| |||| ||||||| |||||||| ||||||||| || | |||| |||||| ||||||||||| ||| ||| ||||||||||| |
|
|
| T |
24025 |
tgcttccataactaaattatgagcaacactattgacttatctcccaatgaattttacattagagttcactaaatcggtattcaccaaatgtctacaatca |
23926 |
T |
|
| Q |
330 |
tgaattattgccatacaatcagagacacc |
358 |
Q |
| |
|
| ||||||||||| |||| |||||||| |
|
|
| T |
23925 |
ttgattattgccatgaaatctgagacacc |
23897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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