View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10602_low_70 (Length: 243)

Name: NF10602_low_70
Description: NF10602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10602_low_70
NF10602_low_70
[»] chr1 (8 HSPs)
chr1 (21-243)||(6521964-6522186)
chr1 (42-243)||(6516870-6517071)
chr1 (46-243)||(6512475-6512672)
chr1 (46-237)||(6506562-6506759)
chr1 (66-140)||(47778382-47778456)
chr1 (66-220)||(47788424-47788578)
chr1 (180-220)||(47759914-47759954)
chr1 (180-220)||(47712999-47713039)
[»] scaffold0341 (2 HSPs)
scaffold0341 (46-237)||(587-784)
scaffold0341 (46-237)||(8240-8437)


Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 21 - 243
Target Start/End: Complemental strand, 6522186 - 6521964
Alignment:
Q  21 ggcgagggtgaatctgatggcgttggttgatagaagaatgaattggtttcatatctcaaattacaactgggtctaacaattctagcacctaacctattgt 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6522186 ggcgagggtgaatctgatggcgttggttgatagaagaatgaattggtttcatatctcaaattacaactgggtctaacaattctagcacctaacctattgt 6522087  T
Q  121 tacaacaatttgaaatttctttgatagattgaaccaaacaatcatcacataatgttttagacaaatcaggtgtgcattgaacaagaccatatatggtttg 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6522086 tacaacaatttgaaatttctttgatagattgaaccaaacaatcatcacataatgttttagacaaatcaggtgtgcattgaacaagaccatatatggtttg 6521987  T
Q  221 gttattatttggaccaacctcat 243  Q
    ||||||| |||||||||||||||    
T  6521986 gttattacttggaccaacctcat 6521964  T

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Target: chr1; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 42 - 243
Target Start/End: Original strand, 6516870 - 6517071
Alignment:
Q  42 gttggttgatagaagaatgaattggtttcatatctcaaattacaactgggtctaacaattctagcacctaacctattgttacaacaatttgaaatttctt 141  Q
    ||||||||||| |||| ||||| ||||||||||||||||| ||||||||||||||||| ||||||||  | ||| |||||||||||  |||  ||||| |    
T  6516870 gttggttgataaaagagtgaatcggtttcatatctcaaataacaactgggtctaacaactctagcactcatcctgttgttacaacatattgcgatttcat 6516969  T
Q  142 tgatagattgaaccaaacaatcatcacataatgttttagacaaatcaggtgtgcattgaacaagaccatatatggtttggttattatttggaccaacctc 241  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||    
T  6516970 tgatagattgaaccaaacaatcatcacaaaatgttttaaacaaatcaggtgtgcattgagctagaccatatatggtttgattattatttggaccaacctc 6517069  T
Q  242 at 243  Q
    ||    
T  6517070 at 6517071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 46 - 243
Target Start/End: Original strand, 6512475 - 6512672
Alignment:
Q  46 gttgatagaagaatgaattggtttcatatctcaaattacaactgggtctaacaattctagcacctaacctattgttacaacaatttgaaatttctttgat 145  Q
    |||||||||||| ||||| ||||||||||||||||| |||||| |||||||||||||||||||| ||||| |||||||||||  |||  ||| |||||||    
T  6512475 gttgatagaagagtgaatcggtttcatatctcaaataacaacttggtctaacaattctagcacccaacctgttgttacaacatcttgggattgctttgat 6512574  T
Q  146 agattgaaccaaacaatcatcacataatgttttagacaaatcaggtgtgcattgaacaagaccatatatggtttggttattatttggaccaacctcat 243  Q
    |||||  |||||||||||||| || |||| ||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||| ||||||||||||    
T  6512575 agattttaccaaacaatcatcgcacaatgatttagacaaatcaggtgtgcattgaacaagagcatatatagtttgattattattttgaccaacctcat 6512672  T

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Target: chr1; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 46 - 237
Target Start/End: Original strand, 6506562 - 6506759
Alignment:
Q  46 gttgatagaagaatgaattggtttcatatctcaaattacaactgggtctaacaattctagcaccta-acctatt-----gttacaacaatttgaaatttc 139  Q
    |||||||||| | ||||||||||||||||||||||| |||||||||||||| || |||| |||||| |||||||     || |||||||||||  |||||    
T  6506562 gttgatagaaaagtgaattggtttcatatctcaaataacaactgggtctaagaaatctaccacctatacctattctattgtcacaacaatttgggatttc 6506661  T
Q  140 tttgatagattgaaccaaacaatcatcacataatgttttagacaaatcaggtgtgcattgaacaagaccatatatggtttggttattatttggaccaa 237  Q
    ||||||||||| | ||||||| |||||||| ||||||| |||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||    
T  6506662 tttgatagatttatccaaacattcatcacacaatgtttcagacaaatcaggtgtgcattgaacaagagcaaatatggtttgattattatttggaccaa 6506759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 66 - 140
Target Start/End: Complemental strand, 47778456 - 47778382
Alignment:
Q  66 gtttcatatctcaaattacaactgggtctaacaattctagcacctaacctattgttacaacaatttgaaatttct 140  Q
    |||||| | ||||||||||| || |||||||||||||||||||| | |||||| ||||||||  |||||||||||    
T  47778456 gtttcaaacctcaaattacagctaggtctaacaattctagcaccaatcctatttttacaacatcttgaaatttct 47778382  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 66 - 220
Target Start/End: Complemental strand, 47788578 - 47788424
Alignment:
Q  66 gtttcatatctcaaattacaactgggtctaacaattctagcacctaacctattgttacaacaatttgaaatttctttgatagattgaaccaaacaatcat 165  Q
    |||||| | ||||||||||| || ||||||| |||||||||||| | ||||||| |||||||  |||||| |||    || ||||||| |||||||||||    
T  47788578 gtttcaaacctcaaattacagcttggtctaataattctagcaccaatcctattgctacaacatcttgaaacttcagcaatggattgaagcaaacaatcat 47788479  T
Q  166 cacataatgttttagacaaatcaggtgtgcattgaacaagaccatatatggtttg 220  Q
    ||||   ||    |||||| ||||| || || ||||||||||||||||| |||||    
T  47788478 cacactgtggaccagacaagtcaggagtacactgaacaagaccatatattgtttg 47788424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 47759914 - 47759954
Alignment:
Q  180 gacaaatcaggtgtgcattgaacaagaccatatatggtttg 220  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  47759914 gacaaatcaggtgtgcactgaacaagaccatatatggtttg 47759954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 47712999 - 47713039
Alignment:
Q  180 gacaaatcaggtgtgcattgaacaagaccatatatggtttg 220  Q
    |||||||||||||| || || ||||||||||||||||||||    
T  47712999 gacaaatcaggtgtacactgcacaagaccatatatggtttg 47713039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 102; Significance: 9e-51; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 46 - 237
Target Start/End: Original strand, 587 - 784
Alignment:
Q  46 gttgatagaagaatgaattggtttcatatctcaaattacaactgggtctaacaattctagcaccta-acctatt-----gttacaacaatttgaaatttc 139  Q
    |||||||||| | ||||||||||||||||||||||| |||||||||||||| || |||| |||||| |||||||     || |||||||||||  |||||    
T  587 gttgatagaaaagtgaattggtttcatatctcaaataacaactgggtctaagaaatctaccacctatacctattctattgtcacaacaatttgggatttc 686  T
Q  140 tttgatagattgaaccaaacaatcatcacataatgttttagacaaatcaggtgtgcattgaacaagaccatatatggtttggttattatttggaccaa 237  Q
    ||||||||||| | ||||||| |||||||| ||||||| |||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||    
T  687 tttgatagatttatccaaacattcatcacacaatgtttcagacaaatcaggtgtgcattgaacaagagcaaatatggtttgattattatttggaccaa 784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 46 - 237
Target Start/End: Original strand, 8240 - 8437
Alignment:
Q  46 gttgatagaagaatgaattggtttcatatctcaaattacaactgggtctaacaattctagcaccta-acctatt-----gttacaacaatttgaaatttc 139  Q
    |||||||||| | ||||||||||||||||||||||| |||||||||||||| || |||| |||||| |||||||     || |||||||||||  |||||    
T  8240 gttgatagaaaagtgaattggtttcatatctcaaataacaactgggtctaagaaatctaccacctatacctattctattgtcacaacaatttgggatttc 8339  T
Q  140 tttgatagattgaaccaaacaatcatcacataatgttttagacaaatcaggtgtgcattgaacaagaccatatatggtttggttattatttggaccaa 237  Q
    ||||||||||| | ||||||| |||||||| ||||||| |||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||    
T  8340 tttgatagatttatccaaacattcatcacacaatgtttcagacaaatcaggtgtgcattgaacaagagcaaatatggtttgattattatttggaccaa 8437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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