View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10602_low_75 (Length: 241)
Name: NF10602_low_75
Description: NF10602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10602_low_75 |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 237875 - 238098
Alignment:
| Q |
1 |
taaaattaagagtatgagatgaagattgtcgttagagacttagagtatgagagttgaccctctcttactttgtgttacaaataatggtatatgaccaaat |
100 |
Q |
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| T |
237875 |
taaaattaagagtatgagagaaagattgtcgttagagacttagagtatgagagttgaccctctcttactttgtgttacaaataatggtatatgaccaaat |
237974 |
T |
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| Q |
101 |
ggacacacactagtagagagaagaactctcaacatgcatgcaattgaatagtccaatccatcaccggacatacttatgatttttaacaaaaattaaaatt |
200 |
Q |
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| T |
237975 |
ggacacacactagtagagagaagaactctcaacatgcatgcaattgaatagtctaatccatcaccggacatacttatgatttttaacaaaaattaaaaat |
238074 |
T |
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| Q |
201 |
caaagtgcttaaaatgagtttttt |
224 |
Q |
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| T |
238075 |
caaagtgcttaaaatgagtttttt |
238098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 75 - 216
Target Start/End: Complemental strand, 228969 - 228829
Alignment:
| Q |
75 |
ttacaaataatggtatatgaccaaatggac------acacactagtagagagaagaac-tctcaacatgcatgcaattgaatagtccaatccatcaccgg |
167 |
Q |
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| T |
228969 |
ttacaaataagggtatatgaccaaatggacgtgctcacacactagttgagagaagaacctctcaataggca----attgaatagtcc----catcacctg |
228878 |
T |
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| Q |
168 |
acatacttatgatttttaacaaaaattaaaattcaaagtgcttaaaatg |
216 |
Q |
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| T |
228877 |
acatgcttatgatttttaacaaaaattaaaaattaaagtgcttgaaatg |
228829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 229032 - 228980
Alignment:
| Q |
1 |
taaaattaagagtatgagatgaagattgtcgttagagacttagagtatgagag |
53 |
Q |
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||||| |||||||||| || ||||||||| ||||||||||||||||||||||| |
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| T |
229032 |
taaaaataagagtatgggaggaagattgttgttagagacttagagtatgagag |
228980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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