View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10602_low_86 (Length: 237)

Name: NF10602_low_86
Description: NF10602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10602_low_86
NF10602_low_86
[»] chr7 (5 HSPs)
chr7 (13-199)||(35611833-35612019)
chr7 (13-137)||(3614589-3614714)
chr7 (59-137)||(5569121-5569199)
chr7 (126-198)||(3614502-3614574)
chr7 (126-220)||(5569214-5569305)
[»] scaffold1903 (2 HSPs)
scaffold1903 (13-137)||(910-1034)
scaffold1903 (126-199)||(1049-1122)
[»] chr4 (2 HSPs)
chr4 (13-137)||(9981839-9981948)
chr4 (126-200)||(9981963-9982037)
[»] chr3 (1 HSPs)
chr3 (82-152)||(33129725-33129795)
[»] chr2 (1 HSPs)
chr2 (20-70)||(15480886-15480936)


Alignment Details
Target: chr7 (Bit Score: 155; Significance: 2e-82; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 13 - 199
Target Start/End: Original strand, 35611833 - 35612019
Alignment:
Q  13 gagaagaataaggtaaggatgaagaagatgatttttgtagcatattagaaagagaatggttagaaagagaaggtagaggaaagaatatgaatgtgaatat 112  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  35611833 gagaataataaggtaaggatgaagaagatgatttttttagcatattagaaagagaatggttagaaagagaagtcagaggaaagaatatgaatgtgaatat 35611932  T
Q  113 gtgaatgtagcagggaaattgaagattgggttggttctctgtacctaaaaaattgaagaaaagtatttagcggtagttaactaccgc 199  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||    
T  35611933 gtgaatgtagcagggaaattgaacattgggttggttctcagtacctaaaaaattaaagaaaagtattcagcggtagttaactaccgc 35612019  T

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Target: chr7; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 13 - 137
Target Start/End: Complemental strand, 3614714 - 3614589
Alignment:
Q  13 gagaagaataaggtaaggatgaagaagatgatttttgtagcatattagaaagagaatggttagaaagagaaggtagaggaaagaatatgaatgtgaatat 112  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||    
T  3614714 gagaataataaggtaaggatgaagaagatgatttttgtagcatattagaaagagaatcgttagaaatagaaggtaaaggaaagaatatgaatgtgaatat 3614615  T
Q  113 gtgaatgtagc-agggaaattgaaga 137  Q
    ||||||||||| ||||||||||||||    
T  3614614 gtgaatgtagcaagggaaattgaaga 3614589  T

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Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 59 - 137
Target Start/End: Original strand, 5569121 - 5569199
Alignment:
Q  59 agaaagagaatggttagaaagagaaggtagaggaaagaatatgaatgtgaatatgtgaatgtagcagggaaattgaaga 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  5569121 agaaagagaatggttagaaagagaaggtagaggaaagaatatgaatgtgaatatgtgaatgtagtagggaaattgaaga 5569199  T

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Target: chr7; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 126 - 198
Target Start/End: Complemental strand, 3614574 - 3614502
Alignment:
Q  126 ggaaattgaagattgggttggttctctgtacctaaaaaattgaagaaaagtatttagcggtagttaactaccg 198  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  3614574 ggaaattgaagattgggttggttctctgcacctaaaaaattgaagaaaagtatttagcggtagttaactaccg 3614502  T

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Target: chr7; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 126 - 220
Target Start/End: Original strand, 5569214 - 5569305
Alignment:
Q  126 ggaaattgaagattgggttggttctctgtacctaaaaaattgaagaaaagtatttagcggtagttaactaccgccgctgaatgccagcggctgtt 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||   || |||| ||||||||||||||    
T  5569214 ggaaattgaagattgggttggttctctgtacctaaaaaattgaagaaaagtattcagcggtagttaacta---ccactgagtgccagcggctgtt 5569305  T

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Target: scaffold1903 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: scaffold1903
Description:

Target: scaffold1903; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 13 - 137
Target Start/End: Original strand, 910 - 1034
Alignment:
Q  13 gagaagaataaggtaaggatgaagaagatgatttttgtagcatattagaaagagaatggttagaaagagaaggtagaggaaagaatatgaatgtgaatat 112  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  910 gagaataataaggtatggatgaagaagatgatttttgtagcatattagaaagagaatggttagaaagagaaggtagaggaaagaatatgaatgtgaatat 1009  T
Q  113 gtgaatgtagcagggaaattgaaga 137  Q
    ||||||||  |||||||||||||||    
T  1010 gtgaatgttacagggaaattgaaga 1034  T

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Target: scaffold1903; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 126 - 199
Target Start/End: Original strand, 1049 - 1122
Alignment:
Q  126 ggaaattgaagattgggttggttctctgtacctaaaaaattgaagaaaagtatttagcggtagttaactaccgc 199  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||    
T  1049 ggaaattgaagattgggttggttctttgtacttaaaaaattgaagaaaagtattcagcggtagttaactaccgc 1122  T

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Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 13 - 137
Target Start/End: Original strand, 9981839 - 9981948
Alignment:
Q  13 gagaagaataaggtaaggatgaagaagatgatttttgtagcatattagaaagagaatggttagaaagagaaggtagaggaaagaatatgaatgtgaatat 112  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||               |||||||||||||||||||||||||||||||||||||    
T  9981839 gagaataataaggtaaggatgaagaagatgatttttgtagcatattag---------------aaagagaaggtagaggaaagaatatgaatgtgaatat 9981923  T
Q  113 gtgaatgtagcagggaaattgaaga 137  Q
    |||||||||||| ||||||||||||    
T  9981924 gtgaatgtagcatggaaattgaaga 9981948  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 126 - 200
Target Start/End: Original strand, 9981963 - 9982037
Alignment:
Q  126 ggaaattgaagattgggttggttctctgtacctaaaaaattgaagaaaagtatttagcggtagttaactaccgcc 200  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||| |||||||| |||||    
T  9981963 ggaaattgaagattgggttggttctctgtaccttaaaaattgaagaaaaatattcagcggcagttaactgccgcc 9982037  T

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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 82 - 152
Target Start/End: Complemental strand, 33129795 - 33129725
Alignment:
Q  82 aaggtagaggaaagaatatgaatgtgaatatgtgaatgtagcagggaaattgaagattgggttggttctct 152  Q
    ||||||| | ||||||||||||||||||| |||||||||||||||||||||||| | ||||||||| ||||    
T  33129795 aaggtagcgtaaagaatatgaatgtgaatgtgtgaatgtagcagggaaattgaacaatgggttggtactct 33129725  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 15480886 - 15480936
Alignment:
Q  20 ataaggtaaggatgaagaagatgatttttgtagcatattagaaagagaatg 70  Q
    |||||||||||||||||| || ||| ||||| |||||||||||||||||||    
T  15480886 ataaggtaaggatgaagaggaagatgtttgttgcatattagaaagagaatg 15480936  T

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