View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10602_low_89 (Length: 236)
Name: NF10602_low_89
Description: NF10602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10602_low_89 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 16 - 219
Target Start/End: Original strand, 3961281 - 3961484
Alignment:
| Q |
16 |
gaagtttcaacatataggagcaagagtataatctcattcctaacatatccagagcatcaattaggtataatattaattcatggtcagtaatttacttgca |
115 |
Q |
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| T |
3961281 |
gaagtttcaacatataggaacaagagtataatctcattcctaacatatccagagcatcaattaggtataatattaattcatggtcagtaatttacttgca |
3961380 |
T |
|
| Q |
116 |
aataaaagaagaatgaatggttaaagatcaagttgagaaatagctttctaaggtacttgtttgtacacactgttcattatctatcatgactagtcaacaa |
215 |
Q |
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| T |
3961381 |
aataaaagaagaatgaatggttaaagatcaagttgagaaatagctttctaaggtacttgtttgtaaacactgttcattatctatcatgactagtcaacaa |
3961480 |
T |
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| Q |
216 |
attt |
219 |
Q |
| |
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|||| |
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| T |
3961481 |
attt |
3961484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 49
Target Start/End: Complemental strand, 3806508 - 3806474
Alignment:
| Q |
15 |
tgaagtttcaacatataggagcaagagtataatct |
49 |
Q |
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||||||||||||||||||||| ||||||||||||| |
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| T |
3806508 |
tgaagtttcaacatataggagaaagagtataatct |
3806474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 49
Target Start/End: Complemental strand, 3813151 - 3813117
Alignment:
| Q |
15 |
tgaagtttcaacatataggagcaagagtataatct |
49 |
Q |
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||||||||||||||||||||| ||||||||||||| |
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| T |
3813151 |
tgaagtttcaacatataggagaaagagtataatct |
3813117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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