View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10602_low_9 (Length: 391)
Name: NF10602_low_9
Description: NF10602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10602_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 2207729 - 2207355
Alignment:
| Q |
1 |
agagtataagaataacgtttgagaagacgtgaatttattatatgnnnnnnnnnaaaaa-tgtgttaagatatgtgagctaacaatgttttcttatggcac |
99 |
Q |
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| T |
2207729 |
agagtataagaataacgtttgagaagacgtgaatctattatatgttttttttaaaaaaatgtgttaagatatgtgagctaacaatgttttcttctggcac |
2207630 |
T |
|
| Q |
100 |
tgggattttaaatcatcatcaaatcacatttagataaactaatgaggttgtgagttcaactatccttgtcgatgtgatgatatttttggtgtgtttacag |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2207629 |
tgggattttaaatcatcatcaaatcacatttagataaactaatgaggttgtgagttcaactatccttgtcgatgtgatgatatttttggtgtgtttacag |
2207530 |
T |
|
| Q |
200 |
taactagttgtgtaagcactttaaattttgaggtctaccttgttaactgatacaatgacaacaacaacatcaacatcatatgttcgtgacgcatatgatg |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2207529 |
taactagttgtgtaagcactttaaattttgaggtctaccttgttaactgatacaatgacaacaacaacatcaacatcatatgttcgtgacgcatatgatg |
2207430 |
T |
|
| Q |
300 |
atcccgtaaatgacatatatgatgatctccttcaagatgaaaaacgataacccatcagtggagacatgaagtact |
374 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2207429 |
atcccgtaaatgacatatatgatgatctccttcaagatgaaaaacgataacccatcagtggagacatgaagtact |
2207355 |
T |
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