View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10602_low_91 (Length: 234)
Name: NF10602_low_91
Description: NF10602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10602_low_91 |
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| [»] chr1 (7 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 11026609 - 11026842
Alignment:
| Q |
1 |
gacttagaggaaaacagtagtcatgtttactatccggaatggatttataatcttatagatgatcaagaggaaatgaaaattcatattgatgatgaagggg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
11026609 |
gacttagaggaaaacagtagtcatgtttactatccggaatggatttataatcttatagatgatgaagaggaaatgaaaattcatattgatgatgaagggg |
11026708 |
T |
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| Q |
101 |
atgaaaaaattgcaagaaaaatggccattgtgggactatggtgcattcagtggcatgctatggatcgaccatcaatgcaaatggtggttcagatgttgga |
200 |
Q |
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| T |
11026709 |
atgaaaaaattgcaagaaaaatggccattgtgggactatggtgcattcagtggcatgctatggatcgaccatcaatgcaaatggtggttcagatgttgga |
11026808 |
T |
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| Q |
201 |
ggaaaatatagataaaactccaatacctcccaat |
234 |
Q |
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|||||||||||| ||||||||||||||||||||| |
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| T |
11026809 |
ggaaaatatagacaaaactccaatacctcccaat |
11026842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 4 - 234
Target Start/End: Original strand, 10993156 - 10993386
Alignment:
| Q |
4 |
ttagaggaaaacagtagtcatgtttactatccggaatggatttataatcttatagatgatcaagaggaaatgaaaattcatattgatgatgaaggggatg |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||| |||| ||||||||||||| |
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| T |
10993156 |
ttagaggaaaacagtagtcatgtttactatccggaatggatttataaacttatagatgatgaagaggaaatgagaattcatgttgacgatgaaggggatg |
10993255 |
T |
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| Q |
104 |
aaaaaattgcaagaaaaatggccattgtgggactatggtgcattcagtggcatgctatggatcgaccatcaatgcaaatggtggttcagatgttggagga |
203 |
Q |
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| T |
10993256 |
aaaaagttgcaaggaaaatggccattgtgggactatggtgcattcagtggcatgctatggatcgaccaacaatgcaaatggtggttcagatgttggaggg |
10993355 |
T |
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| Q |
204 |
aaatatagataaaactccaatacctcccaat |
234 |
Q |
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| T |
10993356 |
agatgtagacaaaactccaatacctcccaat |
10993386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 4 - 230
Target Start/End: Original strand, 11041315 - 11041541
Alignment:
| Q |
4 |
ttagaggaaaacagtagtcatgtttactatccggaatggatttataatcttatagatgatcaagaggaaatgaaaattcatattgatgatgaaggggatg |
103 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||| |
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| T |
11041315 |
ttagaggaaaacagtagtcatgtttactatccggagtggatttataatcttatagatgatgaagaggaaatgagaattcatgttgatgatgaaggggatg |
11041414 |
T |
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| Q |
104 |
aaaaaattgcaagaaaaatggccattgtgggactatggtgcattcagtggcatgctatggatcgaccatcaatgcaaatggtggttcagatgttggagga |
203 |
Q |
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||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
11041415 |
aaaaaattgcaagaaaaatggccatcgtgggactttggtgcattcagtggcatgctatggatcgaccatcaatgcaaatggtggttcaaatgttggaggg |
11041514 |
T |
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| Q |
204 |
aaatatagataaaactccaatacctcc |
230 |
Q |
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| T |
11041515 |
agatgaagacaaaactccaatacctcc |
11041541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 10930949 - 10931178
Alignment:
| Q |
1 |
gacttagaggaaaacagtagtcatgtttactatccggaatggatttataatcttatagatgatcaagaggaaatgaaaattcatattgatgatgaagggg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| || |||| |||||||||| |
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| T |
10930949 |
gacttagaggaaaacagtagtcatgtttactatccggagtggatttataatcttatagatgatcaagaggaaatgagaatacaggttgacgatgaagggg |
10931048 |
T |
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| Q |
101 |
atgaaaaaattgcaagaaaaatggccattgtgggactatggtgcattcagtggcatgctatggatcgaccatcaatgcaaatggtggttcagatgttgga |
200 |
Q |
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| T |
10931049 |
atgaaaaaattgcaaggaaaatggccattgtgggattatggtgcattcagtggcatgctatgcatcgaccaacaatgcaaatggtggttcagatgttgga |
10931148 |
T |
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| Q |
201 |
ggaaaatatagataaaactccaatacctcc |
230 |
Q |
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|| | || | || ||||||||||||||||| |
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| T |
10931149 |
gggagatgtcgacaaaactccaatacctcc |
10931178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 10907066 - 10907298
Alignment:
| Q |
1 |
gacttagaggaaaacagtagtcatgtttactatccggaatggatttataatcttatagatgatcaagaggaaatgaaaattcatattgatgatgaagggg |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||| ||||||| ||||||| ||||||||||||||| |
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| T |
10907066 |
gacttagaggaaaacagtag-catgtttactatccggagtggattgataatcttatagatgatcaagacgaaatgagaattcatgttgatgatgaagggg |
10907164 |
T |
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| Q |
101 |
atgaaaaaattgcaagaaaaatggccattgtgggactatggtgcattcagtggcatgctatggatcgaccatcaatgcaaatggtggttcagatgttgga |
200 |
Q |
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|||||||||||||||| |||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
10907165 |
atgaaaaaattgcaaggaaaatggcaattgtgggactctggtgcatttagtggcatgctatggatcgaccatcaatgcaaatggtggttcaaatgttgga |
10907264 |
T |
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| Q |
201 |
ggaaaatatagataaaactccaatacctcccaat |
234 |
Q |
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|| | || | || ||||||||||||||||||||| |
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| T |
10907265 |
gggagatgtcgacaaaactccaatacctcccaat |
10907298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 155
Target Start/End: Original strand, 9300602 - 9300649
Alignment:
| Q |
108 |
aattgcaagaaaaatggccattgtgggactatggtgcattcagtggca |
155 |
Q |
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| T |
9300602 |
aattgcaaaaaaaatggcaattgtgggattatggtgcattcagtggca |
9300649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 8962828 - 8962896
Alignment:
| Q |
127 |
attgtgggactatggtgcattcagtggcatgctatggatcgaccatcaatgcaaatggtggttcagatg |
195 |
Q |
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||||| ||||| |||||||||||||||||| | || |||||||| | ||| |||||||||| |||||| |
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| T |
8962828 |
attgtcggactttggtgcattcagtggcattcagtgcatcgaccagccatgaaaatggtggtgcagatg |
8962896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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