View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10602_low_96 (Length: 228)
Name: NF10602_low_96
Description: NF10602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10602_low_96 |
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Alignment Details
Target: chr5 (Bit Score: 123; Significance: 2e-63; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 15 - 205
Target Start/End: Original strand, 11442534 - 11442724
Alignment:
| Q |
15 |
atgaaggaaacaacgttgagaaaagggtccgtcggatgtttcctaggagagtgtatactattgtaaattccagtttttggtgaataccaatgaggctgag |
114 |
Q |
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| T |
11442534 |
atgaagcatacaacgtcgagaaaagggtcggtcggaaggctcctaggagagtgtatactattgtaaattccggtttttggtgaataccaagaagggtgag |
11442633 |
T |
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| Q |
115 |
tgatggtattttgtggcatgccacagttgaaatttgcagccattgattttcaggtaagtgaatggtactgcaaaatttcaaatgcagttat |
205 |
Q |
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| T |
11442634 |
tgatggtattttgtggcatgtcacagttgaaatttgcagccattgattttcagaaaagtgaatggtactggaaaattacaaatacagttat |
11442724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 15 - 118
Target Start/End: Original strand, 11453107 - 11453210
Alignment:
| Q |
15 |
atgaaggaaacaacgttgagaaaagggtccgtcggatgtttcctaggagagtgtatactattgtaaattccagtttttggtgaataccaatgaggctgag |
114 |
Q |
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|||||||||||||| | |||||||||||| || ||| | ||||||||||| |||| ||| |||||||||||| ||||||||||||||||||||| | || |
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| T |
11453107 |
atgaaggaaacaacatcgagaaaagggtctgttggaaggttcctaggagactgtaaactgctgtaaattccaggttttggtgaataccaatgagggtaag |
11453206 |
T |
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| Q |
115 |
tgat |
118 |
Q |
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|||| |
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| T |
11453207 |
tgat |
11453210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 29911710 - 29911616
Alignment:
| Q |
15 |
atgaaggaaacaacgttgagaaaagggtccgtcggatgtttcctaggagagtgtatactattgtaaattccagtttttggtgaataccaatgagg |
109 |
Q |
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||||||||||||| || ||||||||||| || ||| | || ||||||| |||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
29911710 |
atgaaggaaacaatgtcaagaaaagggtcagttggaagatttctaggagtatgtatactgttgtaaattccagtttttgatgaataccaatgagg |
29911616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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