View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10603_low_2 (Length: 251)
Name: NF10603_low_2
Description: NF10603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10603_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 101; Significance: 4e-50; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 90 - 194
Target Start/End: Complemental strand, 8162854 - 8162750
Alignment:
| Q |
90 |
tgggaacatccatgattttctgaatctttttcggcgttgcctctgaaaaagaagagaaaaacatgcacagaagttgagtcattgaagaatacgacaaagc |
189 |
Q |
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| T |
8162854 |
tgggaacatccatgattttctgaatcttttttggcgttgcctctgaaaaagaagagaaaaacatgcacagaagttgagtcattgaagaatacgacaaagc |
8162755 |
T |
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| Q |
190 |
atagt |
194 |
Q |
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||||| |
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| T |
8162754 |
atagt |
8162750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 91 - 240
Target Start/End: Original strand, 7316951 - 7317099
Alignment:
| Q |
91 |
gggaacatccatgattttctgaatctttttcggcgttgcctctgaaaaagaagagaaaaacatgcacagaagttgagtcattgaagaatacgacaaagca |
190 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||| |||| ||||| || ||||||||| | |||||||| |
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| T |
7316951 |
gggaacatccatgattttctgaatcttttttggcgttgcccctgaaaaataagagaaaaacat-cacataagttcagctgttgaagaatgcaacaaagca |
7317049 |
T |
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| Q |
191 |
tagtnnnnnnngtaatttggaaagaatcatactatcaagtcctagttgat |
240 |
Q |
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| T |
7317050 |
tagtaataaaagcaattaggaaagaatcatactatcaaggcctagttgat |
7317099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 90 - 168
Target Start/End: Complemental strand, 7219104 - 7219026
Alignment:
| Q |
90 |
tgggaacatccatgattttctgaatctttttcggcgttgcctctgaaaaagaagagaaaaacatgcacagaagttgagt |
168 |
Q |
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| T |
7219104 |
tgggaacatccatgattttcagaatcttttttggcattgcccctgaaaaataagagaaaaacatgcacataagttgagt |
7219026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 74
Target Start/End: Complemental strand, 8163201 - 8163171
Alignment:
| Q |
44 |
cacaagctattagagaaataggatagtcaaa |
74 |
Q |
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| T |
8163201 |
cacaagctattagagaaataggatagtcaaa |
8163171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 240
Target Start/End: Complemental strand, 7244522 - 7244486
Alignment:
| Q |
204 |
aatttggaaagaatcatactatcaagtcctagttgat |
240 |
Q |
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|||| ||||||||||||||||||||| |||||||||| |
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| T |
7244522 |
aattaggaaagaatcatactatcaaggcctagttgat |
7244486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 240
Target Start/End: Original strand, 7323840 - 7323876
Alignment:
| Q |
204 |
aatttggaaagaatcatactatcaagtcctagttgat |
240 |
Q |
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|||| ||||||||||||||||||||| |||||||||| |
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| T |
7323840 |
aattaggaaagaatcatactatcaaggcctagttgat |
7323876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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