View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10603_low_3 (Length: 246)
Name: NF10603_low_3
Description: NF10603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10603_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 6 - 231
Target Start/End: Original strand, 34436905 - 34437130
Alignment:
| Q |
6 |
agacgaggacactaaaataaaatacgtcactgatggatcttacatacaaacaggagttaacaaaaacatttcttcagactatgcatacccaaaaaatcct |
105 |
Q |
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| T |
34436905 |
agacgaggacactaaaataaaatacgtcactgatggatcttacatacaaacaggagttaacaaaaacatttcttctgactatgcatacccaaaaaatcct |
34437004 |
T |
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| Q |
106 |
aatctaccatatccactctcagatctcagaagttttcctcatggaaaccggaactgttaccgattatttgccggaacaaaaggcagtttacatttaataa |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
34437005 |
aatctaccatatccactctcagatctcagaagttttcctcatggaaaccggaactgttaccgattaattgccggaacaaaaggcagtttacatttaataa |
34437104 |
T |
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| Q |
206 |
gagcttctttcttgtatggaaactat |
231 |
Q |
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|||||||||||||||||||||||||| |
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| T |
34437105 |
gagcttctttcttgtatggaaactat |
34437130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 20 - 231
Target Start/End: Original strand, 34443666 - 34443877
Alignment:
| Q |
20 |
aaataaaatacgtcactgatggatcttacatacaaacaggagttaacaaaaacatttcttcagactatgcatacccaaaaaatcctaatctaccatatcc |
119 |
Q |
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|||||||||||| ||| |||||| ||||||||||||||||| |||||| |||||||||| | ||||||||||||||||||||||||||||||||||| | |
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| T |
34443666 |
aaataaaatacggcacagatggagcttacatacaaacaggacttaacagaaacatttctgctaactatgcatacccaaaaaatcctaatctaccatatac |
34443765 |
T |
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| Q |
120 |
actctcagatctcagaagttttcctcatggaaaccggaactgttaccgattatttgccggaacaaaaggcagtttacatttaataagagcttctttcttg |
219 |
Q |
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| T |
34443766 |
attctcagatctcagaagttttcctcaaggaaaccgaaactgttaccgattaattgccggaagaaatggcagtttacatttaataagagcttctttcttg |
34443865 |
T |
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| Q |
220 |
tatggaaactat |
231 |
Q |
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| T |
34443866 |
tatggaaactat |
34443877 |
T |
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