View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10604_1 (Length: 854)
Name: NF10604_1
Description: NF10604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10604_1 |
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Alignment Details
Target: chr1 (Bit Score: 471; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 312 - 842
Target Start/End: Complemental strand, 39445292 - 39444763
Alignment:
| Q |
312 |
aaaaatgttgatgatataattttcttgaaatttttctttagcagatgtatttggtttcatcactctttgcggcaacaacaatggatgtaatgccacagct |
411 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
39445292 |
aaaaatgttgataatataattttcttgaaatttttctttaggtgctgtatttggtttcatcactctttgcggcaacaacaatggatgtaatgccactgct |
39445193 |
T |
|
| Q |
412 |
aacaaaacttcaaaatcaaaaaagtattgttataagaagccctaatacgccaaaatcaatttccctattcatcttcaaaacatgattaaaaggatacatg |
511 |
Q |
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||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
39445192 |
aacaaaatttcaaaataaaaaaagtattgttataagaagccctaatccgccaaaatcaatttccctattcatcttcaaaacatgattaaaaggctacatg |
39445093 |
T |
|
| Q |
512 |
tgcaattatgatttttctgttccctaacttacacctctaattacgtttatcccgttcactatcacacattgaattagatggccctggtttgttaattcaa |
611 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39445092 |
tgcaattatgatttttctgttccctaacttacacctccaattacgtttatcccgttcactatcacacattgaattagatggccctggtttgttaattcaa |
39444993 |
T |
|
| Q |
612 |
catggccctggggaaattcatgataaaatctctatgaatatagaaagagcctttccttttaggaagaataccagatctaaagtaatgagagagagaaaaa |
711 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
39444992 |
catggccctggggaaattcatgataaaatctctatgaatatagaaagagcctttccttttaggaagaagaccagatctaaagtaatgagagaga-aaaaa |
39444894 |
T |
|
| Q |
712 |
cctgaacatccgatcctgaattgtgcatcaaatcaaaagattatatatgagcaagtttcaagatacaaaattcaatatactattggtaggaggactttca |
811 |
Q |
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| T |
39444893 |
cctgaacatccgatcctgaattgtgcatcaaatcaaaagattatatatgagcaagtttcaagatgcaaaattcaatatactattggtaggaggactttca |
39444794 |
T |
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| Q |
812 |
agatgcatgaacagttgtgcgagtttataat |
842 |
Q |
| |
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| T |
39444793 |
agatgcatcaacagttgtgcgagtttataat |
39444763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 39 - 207
Target Start/End: Complemental strand, 39446352 - 39446184
Alignment:
| Q |
39 |
ataaccaaacatttgagctcaattgttgatgaactccaccaataacgaattttttaggagaacttgggttcaattcttaagtgaaatattttttggtcaa |
138 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||| |||| ||| ||||| |||||||| |||| |||| ||| |
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| T |
39446352 |
ataaccaaacatttgacctcaattgttgatgaactccaccgataacaaattttttaggagaatttggattcgattctaaagtgaaacatttgttggccaa |
39446253 |
T |
|
| Q |
139 |
attttacttatctcccaaccgaattcaggattacgagagcccttctcgttgaaactagagggtaaatac |
207 |
Q |
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| T |
39446252 |
attttatttctctcccaaccgaattcaggattacgagagcccttctcgttgaaaccagagggtaaatac |
39446184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 234 - 317
Target Start/End: Complemental strand, 39446166 - 39446083
Alignment:
| Q |
234 |
ctctccttagcaaatgtttgttagatttatttccaatgtcaagttctatttaatttaattcaatcctccagtatatagaaaaat |
317 |
Q |
| |
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| T |
39446166 |
ctctccttaacaaatgtttgttagatttatttccaatgtcaagttctatttaatttaattcaatcctccaatatatagaaaaat |
39446083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 796 - 842
Target Start/End: Complemental strand, 39467362 - 39467316
Alignment:
| Q |
796 |
ggtaggaggactttcaagatgcatgaacagttgtgcgagtttataat |
842 |
Q |
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| T |
39467362 |
ggtaggaggactttcaagattcatgaacagttgtgcgagtttataat |
39467316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 39467689 - 39467630
Alignment:
| Q |
39 |
ataaccaaacatttgagctcaattgttgatgaactccaccaataacgaattttttaggag |
98 |
Q |
| |
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||||||||||||||||| | |||||||||||||||||||||| |||| ||||||||||| |
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| T |
39467689 |
ataaccaaacatttgagattaattgttgatgaactccaccaaggacgatttttttaggag |
39467630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 7e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 235 - 394
Target Start/End: Complemental strand, 35314931 - 35314772
Alignment:
| Q |
235 |
tctccttagcaaatgtttgttagatttatttccaatgtcaagttctatttaatttaat-tcaatcctccagtatatagaaaaatgttgatgatataattt |
333 |
Q |
| |
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|||||||| ||||||||||||||||||| ||||||| || |||||||||||||||| ||||| ||| | ||| || |||||||||||| ||||||||| |
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| T |
35314931 |
tctccttaataaatgtttgttagatttatcgccaatgtaaaattctatttaatttaatatcaattctctaatattta-aaaaatgttgataatataattt |
35314833 |
T |
|
| Q |
334 |
tcttgaaatttttctttagcagatgtatttggtttcatcactctttgcggcaacaacaatg |
394 |
Q |
| |
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|||| |||||||||||||||| ||||||| ||||||||||||| || |||||||| |||| |
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| T |
35314832 |
tctttgaatttttctttagcagctgtatttagtttcatcactctatgtggcaacaataatg |
35314772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 244 - 492
Target Start/End: Complemental strand, 35315858 - 35315621
Alignment:
| Q |
244 |
caaatgtttgttagatttatttccaatgtcaagttctatttaatttaat-tcaatcctccagtatatagaaaaatgttgatgatataattttcttgaaat |
342 |
Q |
| |
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||||||||||| ||| ||||| | |||||| |||||||||||||||| ||||||||||| ||| || |||||||||||| ||||| | |
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| T |
35315858 |
caaatgtttgtaagagttattgttagtgtcaaattctatttaatttaatatcaatcctccaatatttaaaaaaatgttgataatata------------t |
35315771 |
T |
|
| Q |
343 |
ttttctttagcagatgtatttggtttcatcactctttgcggcaacaacaatggatgtaatgccacagctaacaaaacttcaaaatcaaaaaagtattgtt |
442 |
Q |
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|||||||||||| | |||||||||||| | ||||| | |||||||||||| ||| ||| | |||||||||| |||||| || || ||| |||||| |
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| T |
35315770 |
ttttctttagcaactatatttggtttcaccgctcttagtagcaacaacaatgcatgcaatatcggtgctaacaaaatttcaaagtcgaacaagcattgtt |
35315671 |
T |
|
| Q |
443 |
ataagaagccctaatacgccaaaatcaatttccctattcatcttcaaaac |
492 |
Q |
| |
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||||||| |||||| | ||||||| ||| |||||||| ||||| ||||| |
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| T |
35315670 |
ataagaaaccctaaccctccaaaatgaatctccctatttatcttaaaaac |
35315621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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