View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10604_3 (Length: 404)
Name: NF10604_3
Description: NF10604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10604_3 |
 | |
|
| [»] chr2 (8 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 182; Significance: 3e-98; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 87 - 404
Target Start/End: Complemental strand, 5495546 - 5495229
Alignment:
| Q |
87 |
tagagatatcaagataatgcaaatttgacaaattgccaagatgatttgggactactccagaaaaatatgcactggataagtcaaggtaattgagcatatt |
186 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| ||||| | |||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
5495546 |
tagagatatcaagataatgcaagtttgacaaattgccaagatgaggggggaccattccagaaaaatatgaatctgataagtcaaggtaattgagcatatt |
5495447 |
T |
|
| Q |
187 |
gagggaaccaataaattctggaatggaaatttcttcgaagttattgtaactcaggtccaagtgactcaagcgtttcaagtcagccaatgaaggatttatc |
286 |
Q |
| |
|
|||||||||||||||||||||||||| || | ||||||| | ||| || || |||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5495446 |
gagggaaccaataaattctggaatgggaactccttcgaaatcattatatcttaggtccaagtgactcaagtgtttcaagtcagccaatgaaggatttatc |
5495347 |
T |
|
| Q |
287 |
ttaccgccgaagggagagagtgaaaatgtacttgcagttttgttgcagataagatagcgctggagctcaaactttagaacatgaccagttcggttgtcac |
386 |
Q |
| |
|
||||| || |||||||| ||||||||| ||||| |||||||| |||||||||||||| || ||||| || ||||| ||||||||||||| |||||| || |
|
|
| T |
5495346 |
ttaccaccaaagggagacagtgaaaatatacttacagttttgatgcagataagatagggcctgagcttaagctttaaaacatgaccagtttggttgttac |
5495247 |
T |
|
| Q |
387 |
attctatacccttccaat |
404 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
5495246 |
attgtatacccttccaat |
5495229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 26 - 404
Target Start/End: Complemental strand, 5489831 - 5489447
Alignment:
| Q |
26 |
agatattgaagcgaagacagagaagatagccagcttaagtctctagcccaaagtga------tggactagagatatcaagataatgcaaatttgacaaat |
119 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| || |||||||| |||| |
|
|
| T |
5489831 |
agatatcgaagcgaagacagagcagatagccagcttaagtctctagcccaaagtgacgaatatgggctagagatatcaagatagtgtaaatttgataaat |
5489732 |
T |
|
| Q |
120 |
tgccaagatgatttgggactactccagaaaaatatgcactggataagtcaaggtaattgagcatattgagggaaccaataaattctggaatggaaatttc |
219 |
Q |
| |
|
||||||||| | | ||||| | ||||| |||| |||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||| | | | |
|
|
| T |
5489731 |
tgccaagattagtcgggaccattccagtgaaatttgcattggacaagtcaaggtaattgagcatattgagataaccaataaattctggaatgggagctcc |
5489632 |
T |
|
| Q |
220 |
ttcgaagttattgtaactcaggtccaagtgactcaagcgtttcaagtcagccaatgaaggatttatcttaccgccgaagggagagagtgaaaatgtactt |
319 |
Q |
| |
|
||| |||| | | || || |||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||| || ||| | | || | |
|
|
| T |
5489631 |
ttcaaagtcactatagcttaggtccaagtgactcaagtgtttcaagtcagccaatgaaggatttatcttaccaccaaaggaaggcgatgacagtatatta |
5489532 |
T |
|
| Q |
320 |
gcagttttgttgcagataagatagcgctggagctcaaactttagaacatgaccagttcggttgtcacattctatacccttccaat |
404 |
Q |
| |
|
||||||| ||||||||||||| ||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5489531 |
atagttttggtgcagataagataacgccggagctcaaacttttgaacatgaccagtttggttgtcacattctatacccttccaat |
5489447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 16 - 404
Target Start/End: Complemental strand, 5476716 - 5476326
Alignment:
| Q |
16 |
atccatgccgagatattgaagcgaagacagagaagatagccagcttaagtctctagcccaaagtga------tggactagagatatcaagataatgcaaa |
109 |
Q |
| |
|
||||||||| ||||||||||| |||||||||| ||| ||||||||||||||||| |||||| ||| || ||||||||||||||||| |||||| |
|
|
| T |
5476716 |
atccatgccaagatattgaagtgaagacagagcagaaagccagcttaagtctctgacccaaactgaagaatctgaactagagatatcaagatggtgcaaa |
5476617 |
T |
|
| Q |
110 |
tttgacaaattgccaagatgatttgggactactccagaaaaatatgcactggataagtcaaggtaattgagcatattgagggaaccaataaattctggaa |
209 |
Q |
| |
|
||||||||||| ||||||| | | ||||| | ||| | ||| | || | | ||||||||||| ||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
5476616 |
tttgacaaattaccaagatcagtagggaccattcctgtaaattttgaattagataagtcaagataattcagcatattgagagaaccaataaattctggaa |
5476517 |
T |
|
| Q |
210 |
tggaaatttcttcgaagttattgtaactcaggtccaagtgactcaagcgtttcaagtcagccaatgaaggattt-atctt-accgccgaagggagagagt |
307 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| || || |||||| | | ||| |
|
|
| T |
5476516 |
tggaaattcctttgaagttattgtaactcaggtccaagtgactcaagtgtttcaagtaagccaatgaaggatttaatattcaccgcc------aaaaagt |
5476423 |
T |
|
| Q |
308 |
gaaaatgtacttgcagttttgttgcagataagatagcgctggagctcaaactttagaacatgaccagttcggttgtcacattctatacccttccaat |
404 |
Q |
| |
|
|||||| ||||| |||||||||||||||||| |||| | ||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
5476422 |
gaaaatatacttacagttttgttgcagataacataggtattgagctcaaactttagaatatgaccagtttggttgtcacattcaatacccttccaat |
5476326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 88 - 404
Target Start/End: Complemental strand, 5484578 - 5484262
Alignment:
| Q |
88 |
agagatatcaagataatgcaaatttgacaaattgccaagatgatttgggactactccagaaaaatatgcactggataagtcaaggtaattgagcatattg |
187 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||||||| ||||| | ||||| ||||| |||| | |||| |||||||||||| | ||| ||| |
|
|
| T |
5484578 |
agagatatcaaggtagcgcaaatttgacaaattgccaagatgattagggacaattccagtaaaatttgcatttgataggtcaaggtaattcaacattttg |
5484479 |
T |
|
| Q |
188 |
agggaaccaataaattctggaatggaaatttcttcgaagttattgtaactcaggtccaagtgactcaagcgtttcaagtcagccaatgaaggatttatct |
287 |
Q |
| |
|
|| ||||||||| ||||||||||| |||| ||||||| | |||| | || | |||||||||||||||| || ||||||| || |||||||||||||||| |
|
|
| T |
5484478 |
agagaaccaatatgttctggaatgggaattccttcgaaatcattgaagcttaagtccaagtgactcaagtgtgtcaagtcggcgaatgaaggatttatct |
5484379 |
T |
|
| Q |
288 |
taccgccgaagggagagagtgaaaatgtacttgcagttttgttgcagataagatagcgctggagctcaaactttagaacatgaccagttcggttgtcaca |
387 |
Q |
| |
|
||| ||||||| || |||| | | || ||| ||| || |||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5484378 |
caccaccgaaggctgactgtgacagtatagttgtggttctggtgcagataagatagggcttgagctcaaactttagaacatgaccagtttggttgtcaca |
5484279 |
T |
|
| Q |
388 |
ttctatacccttccaat |
404 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
5484278 |
ttcaatacccttccaat |
5484262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 16 - 292
Target Start/End: Complemental strand, 5481792 - 5481510
Alignment:
| Q |
16 |
atccatgccgagatattgaagcgaagacagagaagatagccagcttaagtctctagcccaaagtgatggac------tagagatatcaagataatgcaaa |
109 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||| ||||| ||||||||||| |||||||||| | | ||||||||||||||||||||||| |
|
|
| T |
5481792 |
atccatgccaagatattgaagcgaagacagagtagagagccaacttaagtctctgacccaaagtgacgaaaatgagttagagatatcaagataatgcaaa |
5481693 |
T |
|
| Q |
110 |
tttgacaaattgccaagatgatttgggactactccagaaaaatatgcactggataagtcaaggtaattgagcatattgagggaaccaataaattctggaa |
209 |
Q |
| |
|
||||||| ||||||||||||| |||| | ||| | ||||| |||| | ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5481692 |
tttgacagattgccaagatgaggaaggaccattcctgtaaaatttgcattagataagtcaaggtaattgagcatattgagagaaccaataaattctggaa |
5481593 |
T |
|
| Q |
210 |
tggaaatttcttcgaagttattgtaactcaggtccaagtgactcaagcgtttcaagtcagccaatgaaggatttatcttaccg |
292 |
Q |
| |
|
||| || | ||| ||| | ||| | || ||||||||||||||||| |||| |||| | | ||||||||||||||||||||| |
|
|
| T |
5481592 |
tgggaactcctttgaaatcattaaagcttaggtccaagtgactcaaatgttttaagttaactaatgaaggatttatcttaccg |
5481510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 88 - 303
Target Start/End: Complemental strand, 5466970 - 5466755
Alignment:
| Q |
88 |
agagatatcaagataatgcaaatttgacaaattgccaagatgatttgggactactccagaaaaatatgcactggataagtcaaggtaattgagcatattg |
187 |
Q |
| |
|
||||| |||||||| |||||||||||||||||| || |||||| ||||| | ||||||||||| |||| |||||| ||||||||||||||| ||||| |
|
|
| T |
5466970 |
agagacatcaagatgatgcaaatttgacaaatttccgagatgaggagggaccattccagaaaaatttgcatgggataaatcaaggtaattgagcgtattg |
5466871 |
T |
|
| Q |
188 |
agggaaccaataaattctggaatggaaatttcttcgaagttattgtaactcaggtccaagtgactcaagcgtttcaagtcagccaatgaaggatttatct |
287 |
Q |
| |
|
|| |||||||||||||| ||||||| || | ||| ||| | ||| || |||| ||||||||||||||| |||| |||||| |||||||||||||||| |
|
|
| T |
5466870 |
agagaaccaataaattcaggaatgggaactcctttgaaatcattatagctcaagtccaagtgactcaaatgttttaagtcaagtaatgaaggatttatct |
5466771 |
T |
|
| Q |
288 |
taccgccgaagggaga |
303 |
Q |
| |
|
|||| || |||||||| |
|
|
| T |
5466770 |
tacctcccaagggaga |
5466755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 5500658 - 5500566
Alignment:
| Q |
16 |
atccatgccgagatattgaagcgaagacagagaagatagccagcttaagtctctagcccaaagtgatggactagagatatcaagataatgcaa |
108 |
Q |
| |
|
||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
5500658 |
atccatgccaagatattgaagcgaagtcagagcagatagccagcttaagtctctagtccaaagtgatggactagagatatcaagataatgcaa |
5500566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 5484656 - 5484603
Alignment:
| Q |
16 |
atccatgccgagatattgaagcgaagacagagaagatagccagcttaagtctct |
69 |
Q |
| |
|
||||||||| ||||| ||||||||||| |||| ||| ||||| ||||||||||| |
|
|
| T |
5484656 |
atccatgccaagatagtgaagcgaagatagagcagagagccaacttaagtctct |
5484603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University