View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10604_4 (Length: 386)
Name: NF10604_4
Description: NF10604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10604_4 |
 | |
|
| [»] chr6 (5 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 270; Significance: 1e-151; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 8 - 386
Target Start/End: Complemental strand, 8817276 - 8816912
Alignment:
| Q |
8 |
atgaagtgtcagtgctatgtataactttttggaagagaattgaacttttggaattgaattgttgttgaattttatgatataatgcaatgtggttagattt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8817276 |
atgaagtgtcagtgctatgtataactttttggaagagaattgaacttttggaattgaattgttgttgaattttatgatataatgcaatgtggttagattt |
8817177 |
T |
|
| Q |
108 |
ttgttgttatagagtttgataagcacttatatgataagcatttatgcttttgtgctataagcacttaattaagttgtttaccctattttgagagtagttg |
207 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
8817176 |
ttgtcgttatagagtttgataagca---------------tttatgcttttgtgctataagcacttaattaagttgtttacccaattttgagagtagttg |
8817092 |
T |
|
| Q |
208 |
ttggataagtcgtggttgttggaacttggaacaatggaacatgatgtatctgtattctgttttaatttgctatataa-nnnnnnnngaatttgaacctgg |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
8817091 |
ttggataagtcgtggttgttggaacttggaaaaatggaacatggtgtatctgtattctgttttaatttgctatataattttttttttaatttgaacctgt |
8816992 |
T |
|
| Q |
307 |
atattaaatatttaggtaatgcaatctgattagaatttgctaagagttttgcgaggtctagaatagttattggataattt |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8816991 |
atattaaatatttaggtaatgcaatctgattagaatttgctaagagctttgcgaggtctagaatagttattggataattt |
8816912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 126 - 190
Target Start/End: Original strand, 8420325 - 8420389
Alignment:
| Q |
126 |
ataagcacttatatgataagcatttatgcttttgtgctataagcacttaattaagttgtttaccc |
190 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||| ||||||||||| ||||||||| ||||||||| |
|
|
| T |
8420325 |
ataagcacttatatgataagcatatatgcctttatgctataagcatttaattaagctgtttaccc |
8420389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 237 - 383
Target Start/End: Original strand, 8420536 - 8420680
Alignment:
| Q |
237 |
aacaatggaacatgatgtatctgtattctgttttaatttgctatataannnnnnnngaatttgaacctggatattaaatatttaggtaatgcaatctgat |
336 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||| ||||||||||| |||| |||||| |||| |||||||| ||||||||||||| | |
|
|
| T |
8420536 |
aacaatggaacatgatgtctctgtattatgttttagtttgctatata--cttttttgaataagaacctatatat-aaatatttgagtaatgcaatctggt |
8420632 |
T |
|
| Q |
337 |
tagaatttgctaagagttttg-cgaggtctagaatagttattggataa |
383 |
Q |
| |
|
||||||||| ||| |||||| ||||||||| |||||||||||||||| |
|
|
| T |
8420633 |
tagaatttgacaagtgttttgccgaggtctataatagttattggataa |
8420680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 8419870 - 8419948
Alignment:
| Q |
8 |
atgaagtgtcagtgctatgtataactttttggaagagaattgaacttttggaattgaattgttgttgaattttatgata |
86 |
Q |
| |
|
|||||||||||||||||| |||| ||||| ||||||||||| |||||| | || ||||||| ||||||||||||||| |
|
|
| T |
8419870 |
atgaagtgtcagtgctatatatagcttttcagaagagaattgtactttttggatgaaattgtttttgaattttatgata |
8419948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 193 - 232
Target Start/End: Original strand, 8596715 - 8596754
Alignment:
| Q |
193 |
ttttgagagtagttgttggataagtcgtggttgttggaac |
232 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
8596715 |
ttttgagagtagttgttggataagtcatggttgttggaac |
8596754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 187
Target Start/End: Complemental strand, 16322761 - 16322731
Alignment:
| Q |
157 |
ttgtgctataagcacttaattaagttgttta |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
16322761 |
ttgtgctataagcacttaattaagttgttta |
16322731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 155
Target Start/End: Complemental strand, 3951559 - 3951530
Alignment:
| Q |
126 |
ataagcacttatatgataagcatttatgct |
155 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
3951559 |
ataagcacttatatgataagcatttatgct |
3951530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 155
Target Start/End: Original strand, 8469505 - 8469534
Alignment:
| Q |
126 |
ataagcacttatatgataagcatttatgct |
155 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
8469505 |
ataagcacttatatgataagcatttatgct |
8469534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 154
Target Start/End: Original strand, 28803634 - 28803662
Alignment:
| Q |
126 |
ataagcacttatatgataagcatttatgc |
154 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
28803634 |
ataagcacttatatgataagcatttatgc |
28803662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University