View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10604_5 (Length: 352)

Name: NF10604_5
Description: NF10604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10604_5
NF10604_5
[»] chr8 (10 HSPs)
chr8 (171-328)||(44300411-44300568)
chr8 (12-130)||(44300568-44300686)
chr8 (136-262)||(25391410-25391538)
chr8 (136-272)||(25678024-25678162)
chr8 (136-262)||(25358379-25358507)
chr8 (60-204)||(9229196-9229346)
chr8 (56-107)||(25129739-25129790)
chr8 (212-328)||(25129550-25129665)
chr8 (136-262)||(25617288-25617407)
chr8 (112-206)||(5861187-5861281)
[»] scaffold0466 (1 HSPs)
scaffold0466 (129-272)||(8282-8427)
[»] chr6 (2 HSPs)
chr6 (54-262)||(34249319-34249537)
chr6 (136-262)||(1090688-1090817)
[»] chr1 (2 HSPs)
chr1 (55-272)||(5716840-5717064)
chr1 (128-206)||(29360260-29360338)
[»] chr5 (2 HSPs)
chr5 (116-269)||(32743587-32743743)
chr5 (112-262)||(16098362-16098518)
[»] chr3 (1 HSPs)
chr3 (55-204)||(25079921-25080076)
[»] chr2 (1 HSPs)
chr2 (55-151)||(40709264-40709367)


Alignment Details
Target: chr8 (Bit Score: 154; Significance: 1e-81; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 171 - 328
Target Start/End: Complemental strand, 44300568 - 44300411
Alignment:
Q  171 caatatccagttttgctccccaaggtttacacaactaggtctgaactcgtatactcgaagccaacacgttggagcctcacaaacaatgcccataattatt 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  44300568 caatatccagttttgctccccaaggtttacacaactaggtctgaactcgtatactcgaagccaacacgttggagcctcacaaacgatgcccataattatt 44300469  T
Q  271 gaagatcaaaggagagtaacgatttcttctctgacccatttgttggatatcgacactc 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44300468 gaagatcaaaggagagtaacgatttcttctctgacccatttgttggatatcgacactc 44300411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 12 - 130
Target Start/End: Complemental strand, 44300686 - 44300568
Alignment:
Q  12 atgaagctaataacatgtttggtctcgtgtttagtgtcccatttgttggaaatattaagagtaaaatagaattgagatagttaggaaagatagaagggtc 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  44300686 atgaagctaataacatgtttggtctcgtgtttagtgtcccatttgttggaaatattaagagtaaaatagaattgagatagttaggaaagatagaagagtc 44300587  T
Q  112 gtgccgtggacaaaaccac 130  Q
    |||||||||||||||||||    
T  44300586 gtgccgtggacaaaaccac 44300568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 136 - 262
Target Start/End: Complemental strand, 25391538 - 25391410
Alignment:
Q  136 tgaaagcaaatttccgatggacctctgctgcaatccaatatccagttttgctccccaaggtttacacaactagg--tctgaactcgtatactcgaagcca 233  Q
    ||||||||||||| || |||||||| | ||||||||||||||| |||||||||||||||||||||||||||| |  |||||||||||  |||||| ||||    
T  25391538 tgaaagcaaattttcggtggacctccggtgcaatccaatatccggttttgctccccaaggtttacacaactatgtatctgaactcgtgcactcgaggcca 25391439  T
Q  234 acacgttggagcctcacaaacaatgccca 262  Q
     ||| ||||||| ||| ||||||||||||    
T  25391438 gcactttggagcttcataaacaatgccca 25391410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 136 - 272
Target Start/End: Complemental strand, 25678162 - 25678024
Alignment:
Q  136 tgaaagcaaatttccgatggacctctgctgcaatccaatatccagttttgctccccaaggtttacacaactagg--tctgaactcgtatactcgaagcca 233  Q
    ||||||||||||| || |||||||| | ||||||||||||||| ||||||||  |||||||||||||||||| |  |||||||||||  |||||| ||||    
T  25678162 tgaaagcaaattttcggtggacctccggtgcaatccaatatccggttttgctttccaaggtttacacaactacgtatctgaactcgtgcactcgaggcca 25678063  T
Q  234 acacgttggagcctcacaaacaatgcccataattattga 272  Q
     || |||||||| |||||||||||||||| ||| |||||    
T  25678062 gcatgttggagcttcacaaacaatgcccaaaataattga 25678024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 136 - 262
Target Start/End: Complemental strand, 25358507 - 25358379
Alignment:
Q  136 tgaaagcaaatttccgatggacctctgctgcaatccaatatccagttttgctccccaaggtttacacaactagg--tctgaactcgtatactcgaagcca 233  Q
    ||||||||||||| || |||||||| | ||||||||||||||| |||||||||||||||||||||||||||| |  |||||||||||  ||||||  |||    
T  25358507 tgaaagcaaattttcggtggacctccggtgcaatccaatatccggttttgctccccaaggtttacacaactatgtatctgaactcgtgcactcgagacca 25358408  T
Q  234 acacgttggagcctcacaaacaatgccca 262  Q
     ||| ||||||| ||| ||||||||||||    
T  25358407 gcactttggagcttcataaacaatgccca 25358379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 60 - 204
Target Start/End: Original strand, 9229196 - 9229346
Alignment:
Q  60 gaaatattaagagtaaaatagaattgagatagttaggaaa-gatagaaggg-----tcgtgccgtggacaaaaccactgccctgaaagcaaatttccgat 153  Q
    |||||||||||||| || ||||||||||| |||||||||| |||||||| |     | ||||||||| |||||||||| | ||||||| |||||| ||||    
T  9229196 gaaatattaagagtgaactagaattgagagagttaggaaaagatagaagagaattgttgtgccgtggccaaaaccactactctgaaagaaaattttcgat 9229295  T
Q  154 ggacctctgctgcaatccaatatccagttttgctccccaaggtttacacaa 204  Q
     |||||| | ||||| ||||||||| ||||||||| |||||||||||||||    
T  9229296 agacctcagatgcaacccaatatccggttttgctctccaaggtttacacaa 9229346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 56 - 107
Target Start/End: Complemental strand, 25129790 - 25129739
Alignment:
Q  56 gttggaaatattaagagtaaaatagaattgagatagttaggaaagatagaag 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  25129790 gttggaaatattaagagtaaaatagaattgagatagttaggaaagatcgaag 25129739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 212 - 328
Target Start/End: Complemental strand, 25129665 - 25129550
Alignment:
Q  212 tgaactcgtatactcgaagccaacacgttggagcctcacaaacaatgcccataattattgaagatcaaaggagagtaacgatttcttctctgacccattt 311  Q
    |||||||||  ||| || ||||||  ||||||||||||| ||||||| |||||||||||||||| ||||||||| ||   ||||||||||| | |  |||    
T  25129665 tgaactcgtgcacttgaggccaacgtgttggagcctcacgaacaatgtccataattattgaagaacaaaggagaatagtaatttcttctctta-catttt 25129567  T
Q  312 gttggatatcgacactc 328  Q
    | |||||||||||||||    
T  25129566 gctggatatcgacactc 25129550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 136 - 262
Target Start/End: Complemental strand, 25617407 - 25617288
Alignment:
Q  136 tgaaagcaaatttccgatggacctctgctgcaatccaatatccagttttgctccccaaggtttacacaactaggtctgaactcgtatactcgaagccaac 235  Q
    |||||||||||||||| |||||||| | ||||||||||||||   |||||||| | || ||||||||||||| |       ||||  |||||| || |||    
T  25617407 tgaaagcaaatttccggtggacctccggtgcaatccaatatctgattttgctctctaaagtttacacaactacg-------tcgtgcactcgaggctaac 25617315  T
Q  236 acgttggagcctcacaaacaatgccca 262  Q
    |||||||||| ||||||||||||||||    
T  25617314 acgttggagcttcacaaacaatgccca 25617288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 206
Target Start/End: Complemental strand, 5861281 - 5861187
Alignment:
Q  112 gtgccgtggacaaaaccactgccctgaaagcaaatttccgatggacctctgctgcaatccaatatccagttttgctccccaaggtttacacaact 206  Q
    ||||||||| |||||| ||||| |||||||||||||| || ||||||| || |||||   |||||||  ||||||| | |||  |||||||||||    
T  5861281 gtgccgtggtcaaaactactgctctgaaagcaaattttcggtggacctttgatgcaacttaatatccgattttgcttctcaaaatttacacaact 5861187  T

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Target: scaffold0466 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 129 - 272
Target Start/End: Original strand, 8282 - 8427
Alignment:
Q  129 actgccctgaaagcaaatttccgatggacctctgctgcaatccaatatccagttttgctccccaaggtttacacaacta--ggtctgaactcgtatactc 226  Q
    |||||| ||||||||||||||| ||||||||||| ||||||  ||||||| |||||||||||||| |||||||||||||   ||||||||||||  |||     
T  8282 actgccatgaaagcaaatttccaatggacctctggtgcaatttaatatccggttttgctccccaatgtttacacaactacgtgtctgaactcgtgcactt 8381  T
Q  227 gaagccaacacgttggagcctcacaaacaatgcccataattattga 272  Q
    || || | ||||||||||| ||||||||||| |||| ||| |||||    
T  8382 gaggctagcacgttggagcttcacaaacaatacccaaaataattga 8427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 54 - 262
Target Start/End: Complemental strand, 34249537 - 34249319
Alignment:
Q  54 ttgttggaaatattaagagtaaaatagaattgagatagttaggaaagataga----agg---gtcgtgccgtggacaaaaccactgccctgaaagcaaat 146  Q
    ||||||||||||||||||| ||| ||||||||||| ||||||||| ||||||    ||    || ||||||||| |||||||| ||| ||||||| ||||    
T  34249537 ttgttggaaatattaagagaaaactagaattgagagagttaggaatgatagagaagagttttgttgtgccgtggtcaaaaccattgctctgaaagaaaat 34249438  T
Q  147 ttccgatggacctctgctgcaatccaatatccagttttgctccccaaggtttacacaact--aggtctgaactcgtatactcga-agccaacacgttgga 243  Q
    || || ||||||||   |||||  || ||||||||||||||||||||| |||||| ||||  | ||||||||||||  |||||| | | |||||| ||||    
T  34249437 tttcggtggacctccagtgcaactcattatccagttttgctccccaagatttacataactgcatgtctgaactcgtgcactcgagatcaaacacgatgga 34249338  T
Q  244 gcctcacaaacaatgccca 262  Q
    || ||| ||||||||||||    
T  34249337 gcttcataaacaatgccca 34249319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 262
Target Start/End: Original strand, 1090688 - 1090817
Alignment:
Q  136 tgaaagcaaatttccgatggacctctgctgcaatccaatatccagttttgctccccaaggtttacacaacta--ggtctgaactcgtatactcgaagcc- 232  Q
    ||||||| ||||| ||||||||||    ||||| |||| |||| ||||| ||||||||| ||||||||||||   ||||||||||| | |||||| |||     
T  1090688 tgaaagctaattttcgatggaccttcagtgcaacccaa-atccggttttactccccaagatttacacaactacgtgtctgaactcggacactcgaggcct 1090786  T
Q  233 -aacacgttggagcctcacaaacaatgccca 262  Q
     ||||||  ||||  ||||||||||||||||    
T  1090787 gaacacgacggagtttcacaaacaatgccca 1090817  T

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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 55 - 272
Target Start/End: Complemental strand, 5717064 - 5716840
Alignment:
Q  55 tgttggaaatattaagagtaaaatagaattgagatagttaggaaagatagaag-----ggtcgtgccgtggacaaaaccactgccctgaaagcaaatttc 149  Q
    |||||||||||||||||||||| ||||||| ||| ||||||||||||||||||      || |||||||||  ||||||||||||||||| |||||||||    
T  5717064 tgttggaaatattaagagtaaactagaatttagagagttaggaaagatagaagagagttgttgtgccgtggtaaaaaccactgccctgaatgcaaatttc 5716965  T
Q  150 cgatggacctctgctgcaatccaatatccagttttgctccccaaggtttacacaact--aggtctgaactcgtatactcgaag-ccaacacgttggagcc 246  Q
    || || || || | ||||| ||||  |||  |||||||||||||  |||||||||||    |||| ||||| |  |||||||| | || ||| ||||||     
T  5716964 cggtgtacttccggtgcaacccaa-gtccgattttgctccccaaaatttacacaactgcgtgtctaaactcatccactcgaagtcaaaaacgatggagct 5716866  T
Q  247 tcacaaacaatgcccataattattga 272  Q
    ||||||| |||||||||||| |||||    
T  5716865 tcacaaataatgcccataataattga 5716840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 128 - 206
Target Start/End: Complemental strand, 29360338 - 29360260
Alignment:
Q  128 cactgccctgaaagcaaatttccgatggacctctgctgcaatccaatatccagttttgctccccaaggtttacacaact 206  Q
    ||||||| ||||||||||||| || |||||||| | ||||| |||||||||  ||||||||| ||||||||||||||||    
T  29360338 cactgccttgaaagcaaattttcggtggacctccggtgcaacccaatatccgattttgctcctcaaggtttacacaact 29360260  T

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Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 116 - 269
Target Start/End: Original strand, 32743587 - 32743743
Alignment:
Q  116 cgtggacaaaaccactgccctgaaagcaaatttccgatggacctctgctgcaatccaatatccagttttgctccccaaggtttacacaact--aggtctg 213  Q
    ||||| |||||| ||| ||||||||||||||||||| |||||||| | ||||||| ||| ||| | |||||||||||||||||||||||||    |||||    
T  32743587 cgtggccaaaactactaccctgaaagcaaatttccggtggacctccgatgcaatctaatttcctgatttgctccccaaggtttacacaactgcttgtctg 32743686  T
Q  214 aactcgtatactcgaagcc-aacacgttggagcctcacaaacaatgcccataattat 269  Q
    ||||| |  ||| || ||| |||||| |||||| ||||||||||| |||| ||||||    
T  32743687 aactcatgcacttgaggccaaacacgatggagcttcacaaacaatacccaaaattat 32743743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 112 - 262
Target Start/End: Original strand, 16098362 - 16098518
Alignment:
Q  112 gtgccgtggacaaaaccactgccctgaaagcaaatttccgatggacctctgctgcaatccaatatccagttttgctccccaaggtttacacaactaggtc 211  Q
    ||||||||| |||||||||| ||||||||||||| ||||| |||| |||   |||||| ||||| || |||||||||  ||| ||||||||||||| ||     
T  16098362 gtgccgtggccaaaaccactaccctgaaagcaaaattccggtggatctccagtgcaattcaataaccggttttgctcttcaaagtttacacaactacgtg 16098461  T
Q  212 tg--aactcgtatactcgaagccaacacgttggagcc----tcacaaacaatgccca 262  Q
    ||  |||||||  |||||| ||||||||||||||||     ||||||||||||||||    
T  16098462 tgtgaactcgttcactcgaggccaacacgttggagctagcttcacaaacaatgccca 16098518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 55 - 204
Target Start/End: Original strand, 25079921 - 25080076
Alignment:
Q  55 tgttggaaatattaagagtaaaatagaattgagatagttaggaaagatagaag-----ggtcgtgccgtggacaaaaccactgccctgaaagcaaatttc 149  Q
    ||||||||||||||  | ||||||||||||||||||||||||||  ||| |||      || |||| ||||  ||| ||||||| |||||||||||||||    
T  25079921 tgttggaaatattacaattaaaatagaattgagatagttaggaataataaaagagatttgttgtgcagtggcaaaagccactgctctgaaagcaaatttc 25080020  T
Q  150 cgatggacctctgctgcaatccaatatcc-agttttgctccccaaggtttacacaa 204  Q
    || |||||||| | ||||| |||||| ||  ||||| ||||  |||||||||||||    
T  25080021 cgctggacctccggtgcaacccaatacccgggtttttctccgtaaggtttacacaa 25080076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 151
Target Start/End: Complemental strand, 40709367 - 40709264
Alignment:
Q  55 tgttggaaatattaagagtaaaatagaattgagatagttaggaaagatagaag-------ggtcgtgccgtggacaaaaccactgccctgaaagcaaatt 147  Q
    |||||||||||||||||||||| || ||||  ||| ||||||||||| |||||        ||  |||||||| ||||| |||||||||||||| |||||    
T  40709367 tgttggaaatattaagagtaaattaaaatttggatggttaggaaagaaagaagagagttttgttatgccgtggccaaaatcactgccctgaaagtaaatt 40709268  T
Q  148 tccg 151  Q
    ||||    
T  40709267 tccg 40709264  T

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