View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10604_6 (Length: 338)
Name: NF10604_6
Description: NF10604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10604_6 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 14 - 338
Target Start/End: Complemental strand, 33858876 - 33858552
Alignment:
| Q |
14 |
gaaccaatgtatgattaggaaatgttaggctagtggtgtgtaatgaaatggactagataaacttacttcattccaagattttccatgagcaagacgcgga |
113 |
Q |
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| T |
33858876 |
gaaccaatgtatgattaggaaatgttaggctagtggtgtgtaatgaaatggactagataaacttacttcattccaagattttccatgcgcaagacgcgga |
33858777 |
T |
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| Q |
114 |
tacacaggtgctttaggatttgcaaatgcgatgaagttcgaaattgacacaagtctaggctgcaatactcaatcatatgaatgcttattagcataaaatt |
213 |
Q |
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| T |
33858776 |
tacacaggtgctttaggatttgcaaatgcgatgaagttcgaaattgacacaagtctaggctgcaatactcaatcatatgaatgcttattagcataaaatt |
33858677 |
T |
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| Q |
214 |
aaatattaaagccaagtcgaaagcaaagaagaaataaaacactgttggcattgcaaatttagcaagnnnnnnnttgaagatgccaaataacaagatcaga |
313 |
Q |
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| T |
33858676 |
aaatattaaagccaagtctaaagcaaagaagaaataaaacactgttggcattgcaaatttagcaagaaaaaaattgaagataccaaataacaagatcaga |
33858577 |
T |
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| Q |
314 |
agatatgacttacattggataatcc |
338 |
Q |
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| T |
33858576 |
agatatgacttacattggataatcc |
33858552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 14 - 194
Target Start/End: Complemental strand, 33873736 - 33873556
Alignment:
| Q |
14 |
gaaccaatgtatgattaggaaatgttaggctagtggtgtgtaatgaaatggactagataaacttacttcattccaagattttccatgagcaagacgcgga |
113 |
Q |
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| T |
33873736 |
gaaccaatgtataattaggaaatgttaggttagtattgtgtaattaaatagactagataaacttacttcattccaagactttccatgagcaaggcgtgga |
33873637 |
T |
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| Q |
114 |
tacacaggtgctttaggatttgcaaatgcgatgaagttcgaaattgacacaagtctaggctgcaatactcaatcatatgaa |
194 |
Q |
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| T |
33873636 |
tatacaggtgctttaggatttgcaaatgcgatgaagtttgaaactgcaacaagcttaggctgcaatgctcaatcaaatgaa |
33873556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 71 - 213
Target Start/End: Complemental strand, 33869129 - 33868987
Alignment:
| Q |
71 |
taaacttacttcattccaagattttccatgagcaagacgcggatacacaggtgctttaggatttgcaaatgcgatgaagttcgaaattgacacaagtcta |
170 |
Q |
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| T |
33869129 |
taaacatacttcattccaagactttccattagcaaggcgtggatacacaggtgctttaggatttgcaaatgcgatgaagttcgaaactgccacaagctta |
33869030 |
T |
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| Q |
171 |
ggctgcaatactcaatcatatgaatgcttattagcataaaatt |
213 |
Q |
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| T |
33869029 |
ggctgcaatgctcaatcaaatgaacacttgttagcataaaatt |
33868987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 287 - 338
Target Start/End: Complemental strand, 33873431 - 33873380
Alignment:
| Q |
287 |
ttgaagatgccaaataacaagatcagaagatatgacttacattggataatcc |
338 |
Q |
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| T |
33873431 |
ttgaagataccaaaaaacaagatcagtagatatgacttacattggataatcc |
33873380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 177
Target Start/End: Complemental strand, 42781889 - 42781784
Alignment:
| Q |
72 |
aaacttacttcattccaagattttccatgagcaagacgcggatacacaggtgctttaggatttgcaaatgcgatgaagttcgaaattgacacaagtctag |
171 |
Q |
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| T |
42781889 |
aaacttacttcatcccaagatttcccttgagcaaggcgaggatataaaggcgctttaggattggcaaatgatatgaaattggaaaccgccacaagtttag |
42781790 |
T |
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| Q |
172 |
gctgca |
177 |
Q |
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| T |
42781789 |
gctgca |
42781784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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