View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10605_high_4 (Length: 259)
Name: NF10605_high_4
Description: NF10605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10605_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 16 - 249
Target Start/End: Original strand, 5509500 - 5509733
Alignment:
| Q |
16 |
tcaacattttctctcataccaagttcaaagttttcacatttttctgataaaagtttgaactttgtgtcttcccatttagaatccatgaaaaagcttggat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5509500 |
tcaacattttctctcataccaagttcaaagttttcacatttttctgataaaagtttgaactttgtgtcttcccatttagaatccatgaaaaagcttggat |
5509599 |
T |
|
| Q |
116 |
ttttcaaccataacaatatcataaacattgctaccattgtcccaaaagagagaaaaatcactactagaaaactttcagttaccacaatccctataaaacc |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5509600 |
ttttcaaccataacaatatcataaacattgctaccattgtcccaaaagagagaaaaatcactattagaaaactttcagttaccacaatccctataaaacc |
5509699 |
T |
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| Q |
216 |
aagcccaattccagaaattgctcaaccccctttg |
249 |
Q |
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|| ||||||||||||||||||||||||||||||| |
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| T |
5509700 |
aaccccaattccagaaattgctcaaccccctttg |
5509733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 20432804 - 20432989
Alignment:
| Q |
16 |
tcaacattttctctcataccaagttcaaagttttcacatttttctgataaaagtttgaactttgtgtcttcccatttagaatccatgaaaaagcttggat |
115 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20432804 |
tcaacattttctctcataccaagttcaaggttttcacatttttctgataaaggttcaaactttgtgtcttcccatttagaatccatgaaaaagcttggat |
20432903 |
T |
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| Q |
116 |
ttttcaaccataacaatatcataaacattgctaccattgtcccaaaagagagaaaaatcactactagaaaactttcagttaccacaat |
203 |
Q |
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|||||| || | ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
20432904 |
ttttcagcc--accaatatcataaacattgctaccattgtaccaaaagagataaaaatcactactagaaaactttcagttaccacaat |
20432989 |
T |
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