View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10605_high_8 (Length: 205)
Name: NF10605_high_8
Description: NF10605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10605_high_8 |
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| [»] scaffold0236 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 43702863 - 43702690
Alignment:
| Q |
18 |
gaataagctggttttttgtttaattttcacataaagaggagaagcaagaaagaataagacagtggatataagcatgagtattgctggaacaccaaaacca |
117 |
Q |
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| T |
43702863 |
gaataagctggttttttgtttaattttcacataaagaggagaagcaagaaagaataagacagtggatataagcatgagtattgctggaacaccaaaacca |
43702764 |
T |
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| Q |
118 |
actttccaaccaagatgatcttggatatatactattccggtgagagctattatgacagctatagttgtgaaagc |
191 |
Q |
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| T |
43702763 |
actttccaaccaagatgatcttggatatatactattccagtgagagctattatgacagctatagttgtgaaagc |
43702690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 22 - 191
Target Start/End: Complemental strand, 43713683 - 43713514
Alignment:
| Q |
22 |
aagctggttttttgtttaattttcacataaagaggagaagcaagaaagaataagacagtggatataagcatgagtattgctggaacaccaaaaccaactt |
121 |
Q |
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| T |
43713683 |
aagctggttctttgtgtaattttcacataaagtggagaagcaagaaagaacaagacagtggatataagcatgagtgctgctggaacaccaaaaccaattc |
43713584 |
T |
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| Q |
122 |
tccaaccaagatgatcttggatatatactattccggtgagagctattatgacagctatagttgtgaaagc |
191 |
Q |
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| T |
43713583 |
tccaaccaagatgatcttggatatatactattccggtgagagctattatgacagctatagttatgaaagc |
43713514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 22 - 191
Target Start/End: Complemental strand, 43686359 - 43686190
Alignment:
| Q |
22 |
aagctggttttttgtttaattttcacataaagaggagaagcaagaaagaataagacagtggatataagcatgagtattgctggaacaccaaaaccaactt |
121 |
Q |
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| T |
43686359 |
aagctggttctttgtgtaattttcacataaagtggagaagcaagaaagaacaagacagtggatataagcatgagtgctgctggaacaccaaaaccaattc |
43686260 |
T |
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| Q |
122 |
tccaaccaagatgatcttggatatatactattccggtgagagctattatgacagctatagttgtgaaagc |
191 |
Q |
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| T |
43686259 |
tccaaccaagatgatcttggatatatactattccaaatagagctgctatgacagctatagttgtggaagc |
43686190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 46 - 191
Target Start/End: Complemental strand, 43727561 - 43727416
Alignment:
| Q |
46 |
acataaagaggagaagcaagaaagaataagacagtggatataagcatgagtattgctggaacaccaaaaccaactttccaaccaagatgatcttggatat |
145 |
Q |
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| T |
43727561 |
acataaagaggagaagcaagaaagaaacagatagtagataaaagcatgagtgctgctggaacaccaaaaccaattttccaaccaagatgctcttggatat |
43727462 |
T |
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| Q |
146 |
atactattccggtgagagctattatgacagctatagttgtgaaagc |
191 |
Q |
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| T |
43727461 |
atacaattacagtgagagctagtatgatagaaatagttgtgaaagc |
43727416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 100 - 146
Target Start/End: Complemental strand, 43734977 - 43734931
Alignment:
| Q |
100 |
gctggaacaccaaaaccaactttccaaccaagatgatcttggatata |
146 |
Q |
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| T |
43734977 |
gctggaacaccaaaacctagtttccaaccaagatgatcttggatata |
43734931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 82; Significance: 6e-39; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 46 - 171
Target Start/End: Original strand, 24361 - 24486
Alignment:
| Q |
46 |
acataaagaggagaagcaagaaagaataagacagtggatataagcatgagtattgctggaacaccaaaaccaactttccaaccaagatgatcttggatat |
145 |
Q |
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||||||||||||||||||||||||||||| | ||||||| || ||||||| ||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
24361 |
acataaagaggagaagcaagaaagaataacaatgtggataaaaacatgagtgctgctggaactccaaaaccaattttccaaccaagatgatcttggatat |
24460 |
T |
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| Q |
146 |
atactattccggtgagagctattatg |
171 |
Q |
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|||||||| | ||||||||||||||| |
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| T |
24461 |
atactattacagtgagagctattatg |
24486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 46 - 171
Target Start/End: Complemental strand, 25273361 - 25273236
Alignment:
| Q |
46 |
acataaagaggagaagcaagaaagaataagacagtggatataagcatgagtattgctggaacaccaaaaccaactttccaaccaagatgatcttggatat |
145 |
Q |
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||||||||||||||||||||||||||||| | ||||| | || ||||||| ||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
25273361 |
acataaagaggagaagcaagaaagaataacagtgtggacaaaaacatgagtgctgctggaactccaaaaccaattttccaaccaagatgatcttggatat |
25273262 |
T |
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| Q |
146 |
atactattccggtgagagctattatg |
171 |
Q |
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|||||||| | ||||||||||||||| |
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| T |
25273261 |
atactattacagtgagagctattatg |
25273236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 5e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 46 - 175
Target Start/End: Complemental strand, 2689935 - 2689806
Alignment:
| Q |
46 |
acataaagaggagaagcaagaaagaataagacagtggatataagcatgagtattgctggaacaccaaaaccaactttccaaccaagatgatcttggatat |
145 |
Q |
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|||||||| |||||||||||||| || |||| |||||| | | ||| ||| |||||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
2689935 |
acataaagtggagaagcaagaaaaaagaagaaagtggaaaagaacataagtgctgctggaacaccaaaaccaagtttccatccaagatgatcttggatat |
2689836 |
T |
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| Q |
146 |
atactattccggtgagagctattatgacag |
175 |
Q |
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|||||||||| |||| || |||||||||| |
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| T |
2689835 |
atactattcctgtgaatgcaattatgacag |
2689806 |
T |
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