View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10605_low_11 (Length: 239)
Name: NF10605_low_11
Description: NF10605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10605_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 35953874 - 35954094
Alignment:
| Q |
1 |
ttgtatttgatttttctttgtctagtttctccatatttttcaagaacatt-----ttatataattgttgtttgatttgtcttctcgatcaatctatataa |
95 |
Q |
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| T |
35953874 |
ttgtatttaatttttctttgtctagtttctccatatttttcaagaacattatcctttatataattgttgtttgatttgtcttctcgatcaatctatataa |
35953973 |
T |
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| Q |
96 |
attaagataaatatttggaggatcatgcatagtgcatacaattgtaattatataaaaactagaagaaaatgtggtcgaatcacaactttattttggagaa |
195 |
Q |
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| T |
35953974 |
attaagataaatatttggaggatca-------tgcatacaattgtaattatataaaaactagaagaaaatgtggtcgaatcacaactttattttggagaa |
35954066 |
T |
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| Q |
196 |
tttctatggtggcaacttaacatgtaca |
223 |
Q |
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| T |
35954067 |
tttctatggtggcaacttaacatgtaca |
35954094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 2 - 107
Target Start/End: Original strand, 35948302 - 35948407
Alignment:
| Q |
2 |
tgtatttgatttttctttgtctagtttctccatatttttcaagaacattttatataattgttgtttgatttgtcttctcgatcaatctatataaattaag |
101 |
Q |
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| T |
35948302 |
tgtatttaatttatctttgtctagtttttccatatttttcaagaacattttatatagtcgttgtttgatttattttcacaatcaatctatataaatcgag |
35948401 |
T |
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| Q |
102 |
ataaat |
107 |
Q |
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| T |
35948402 |
ataaat |
35948407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 35940263 - 35940344
Alignment:
| Q |
7 |
ttgatttttctttgtctagtttctcc---atatttttcaagaacattttatataattgttgtttgatttgtcttctcgatca |
85 |
Q |
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| T |
35940263 |
ttgatttttctttgtctagtttccccgtaatattaatccagaacattttatatagtcctagtttgatttgtcttcttgatca |
35940344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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