View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10605_low_16 (Length: 226)

Name: NF10605_low_16
Description: NF10605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10605_low_16
NF10605_low_16
[»] chr8 (1 HSPs)
chr8 (7-210)||(28954989-28955193)
[»] chr4 (2 HSPs)
chr4 (7-210)||(10799937-10800141)
chr4 (44-210)||(38969648-38969814)
[»] chr5 (3 HSPs)
chr5 (15-210)||(22123668-22123864)
chr5 (44-210)||(37571116-37571282)
chr5 (7-86)||(34628589-34628669)
[»] scaffold0029 (1 HSPs)
scaffold0029 (12-210)||(57786-57985)
[»] chr7 (2 HSPs)
chr7 (44-210)||(18338234-18338400)
chr7 (44-210)||(7302351-7302517)
[»] chr3 (1 HSPs)
chr3 (44-210)||(33905290-33905456)
[»] chr2 (4 HSPs)
chr2 (44-210)||(35596712-35596878)
chr2 (44-210)||(4965447-4965613)
chr2 (153-210)||(37367773-37367830)
chr2 (44-144)||(37389225-37389325)


Alignment Details
Target: chr8 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 7 - 210
Target Start/End: Original strand, 28954989 - 28955193
Alignment:
Q  7 aggagcagagagtagtagttggcccgccccc-aaaatcacatcagaagaggtgtgcacaagagttagtgattatcctaaagtcacttattttggcataac 105  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||    
T  28954989 aggatcagagagtagtagttggcccgccccctaaaatcacatcagaagaggtgtgcacaagagttagtgattatcctaaagtcactgattttggcacaac 28955088  T
Q  106 tgtcccaataccaggatacagagttgaccaccattggacnnnnnnnngtatattttgggacctcccctattggaaagataacttgctcagacataatcct 205  Q
    ||||||||||||||||||| ||||||||||||| |||||        ||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  28955089 tgtcccaataccaggatacggagttgaccaccactggacaaaaaaaagtatattttgggacctcccctattggaaagataacttgctcagacataatctt 28955188  T
Q  206 gatgt 210  Q
    |||||    
T  28955189 gatgt 28955193  T

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Target: chr4 (Bit Score: 141; Significance: 4e-74; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 7 - 210
Target Start/End: Complemental strand, 10800141 - 10799937
Alignment:
Q  7 aggagcagagagtagtagttggcccgccccc-aaaatcacatcagaagaggtgtgcacaagagttagtgattatcctaaagtcacttattttggcataac 105  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||    
T  10800141 aggatcagagagtagtagttggcccgccccctaaaatcacatcagaagaggtgtgcacaagagttagtgattatcctaaagtcactgattttggcacaac 10800042  T
Q  106 tgtcccaataccaggatacagagttgaccaccattggacnnnnnnnngtatattttgggacctcccctattggaaagataacttgctcagacataatcct 205  Q
    ||||||||||||||||||| ||||||||||||| | |||        ||||||||||||||||||| ||||||||||||||||||||||||||||||| |    
T  10800041 tgtcccaataccaggatacggagttgaccaccacttgacaaaaaagagtatattttgggacctcccatattggaaagataacttgctcagacataatctt 10799942  T
Q  206 gatgt 210  Q
    |||||    
T  10799941 gatgt 10799937  T

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Target: chr4; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 44 - 210
Target Start/End: Complemental strand, 38969814 - 38969648
Alignment:
Q  44 acatcagaagaggtgtgcacaagagttagtgattatcctaaagtcacttattttggcataactgtcccaataccaggatacagagttgaccaccattgga 143  Q
    ||||||||||| ||||| ||||||||| |||||||||| ||||||||| ||| |||   | |||||||||||||| ||||| |||| |||||||| ||||    
T  38969814 acatcagaagaagtgtggacaagagtttgtgattatccaaaagtcactgattatggtcgagctgtcccaataccaagatacggagtagaccaccactgga 38969715  T
Q  144 cnnnnnnnngtatattttgggacctcccctattggaaagataacttgctcagacataatcctgatgt 210  Q
    |        ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  38969714 ctaaaaggagtatattttgggacctcccatattggaaagataacttgctcagacataatcttgatgt 38969648  T

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Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 15 - 210
Target Start/End: Complemental strand, 22123864 - 22123668
Alignment:
Q  15 agagtagtagttggcccgcccccaaaat-cacatcagaagaggtgtgcacaagagttagtgattatcctaaagtcacttattttggcataactgtcccaa 113  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  22123864 agagtagtagttggcccgccccctaaattcacatcagaagaggtgtgcacaagagttagtgattatcctaaagtcactgattttggcacaactgtcccaa 22123765  T
Q  114 taccaggatacagagttgaccaccattggacnnnnnnnngtatattttgggacctcccctattggaaagataacttgctcagacataatcctgatgt 210  Q
    ||||||||||| ||||||||||||| |||||        ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  22123764 taccaggatacggagttgaccaccactggacaaaaaaaagtatattttggaacctcccctattggaaagataacttgctcagacataatcttgatgt 22123668  T

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Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 44 - 210
Target Start/End: Complemental strand, 37571282 - 37571116
Alignment:
Q  44 acatcagaagaggtgtgcacaagagttagtgattatcctaaagtcacttattttggcataactgtcccaataccaggatacagagttgaccaccattgga 143  Q
    ||||||||||| ||||| ||||||||| |||||||||| ||||||||| ||| |||   | |||||||||||||| ||||| |||| ||||| || ||||    
T  37571282 acatcagaagaagtgtggacaagagtttgtgattatccaaaagtcactgattatggtcgagctgtcccaataccaagatacggagtagaccatcactgga 37571183  T
Q  144 cnnnnnnnngtatattttgggacctcccctattggaaagataacttgctcagacataatcctgatgt 210  Q
    |        ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  37571182 ctaaaaggagtatattttgggacctcccatattggaaagataacttgctcagacataatcttgatgt 37571116  T

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Target: chr5; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 7 - 86
Target Start/End: Original strand, 34628589 - 34628669
Alignment:
Q  7 aggagcagagagtagtagttggcccgccccc-aaaatcacatcagaagaggtgtgcacaagagttagtgattatcctaaag 86  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34628589 aggatcagagagtagtagttggcccgccccctaaaatcacatcagaagaggtgtgcacaagagttagtgattatcctaaag 34628669  T

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Target: scaffold0029 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 12 - 210
Target Start/End: Complemental strand, 57985 - 57786
Alignment:
Q  12 cagagagtagtagttggcccgccccc-aaaatcacatcagaagaggtgtgcacaagagttagtgattatcctaaagtcacttattttggcataactgtcc 110  Q
    |||||||||||| ||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  57985 cagagagtagtaattggcccgccccctaaaattacatcagtagaggtgtgcacaagagttagtgattatcctaaagtcactgattttggcacaactgtcc 57886  T
Q  111 caataccaggatacagagttgaccaccattggacnnnnnnnngtatattttgggacctcccctattggaaagataacttgctcagacataatcctgatgt 210  Q
    |||||||||||||| ||||| ||||||| |||||        ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  57885 caataccaggatacggagttaaccaccactggacaaaaaagagtatattttgggacctcccctattggaaagataacttgctcagacataatcttgatgt 57786  T

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Target: chr7 (Bit Score: 79; Significance: 4e-37; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 44 - 210
Target Start/End: Complemental strand, 18338400 - 18338234
Alignment:
Q  44 acatcagaagaggtgtgcacaagagttagtgattatcctaaagtcacttattttggcataactgtcccaataccaggatacagagttgaccaccattgga 143  Q
    ||||||||||| ||||| ||||||||| |||||||||| ||||||||| ||| |||   | |||||||||||||| ||||| |||| |||||||| ||||    
T  18338400 acatcagaagaagtgtggacaagagtttgtgattatccaaaagtcactgattatggtcgagctgtcccaataccaagatacggagtagaccaccactgga 18338301  T
Q  144 cnnnnnnnngtatattttgggacctcccctattggaaagataacttgctcagacataatcctgatgt 210  Q
    |        ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  18338300 ctaaaaggagtatattttgggacctcccatattggaaagataacttgctcagacataatcttgatgt 18338234  T

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Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 44 - 210
Target Start/End: Complemental strand, 7302517 - 7302351
Alignment:
Q  44 acatcagaagaggtgtgcacaagagttagtgattatcctaaagtcacttattttggcataactgtcccaataccaggatacagagttgaccaccattgga 143  Q
    |||||| |||| ||||| ||||||||| |||||||||| ||||||||| ||| |||   | |||||||||||||| ||||| |||| |||||||| ||||    
T  7302517 acatcataagaagtgtggacaagagtttgtgattatccaaaagtcactgattatggtcgagctgtcccaataccaagatacggagtagaccaccactgga 7302418  T
Q  144 cnnnnnnnngtatattttgggacctcccctattggaaagataacttgctcagacataatcctgatgt 210  Q
    |        ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  7302417 ctaaaaggagtatattttgggacctcccatattggaaagataacttgctcagacataatcttgatgt 7302351  T

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Target: chr3 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 44 - 210
Target Start/End: Complemental strand, 33905456 - 33905290
Alignment:
Q  44 acatcagaagaggtgtgcacaagagttagtgattatcctaaagtcacttattttggcataactgtcccaataccaggatacagagttgaccaccattgga 143  Q
    ||||||||||| ||||| ||||||||| |||||||||| ||||||||| ||| |||   | |||||||||||||| ||||| |||| |||||||| ||||    
T  33905456 acatcagaagaagtgtggacaagagtttgtgattatccaaaagtcactgattatggtcgagctgtcccaataccaagatacggagtagaccaccactgga 33905357  T
Q  144 cnnnnnnnngtatattttgggacctcccctattggaaagataacttgctcagacataatcctgatgt 210  Q
    |        ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  33905356 ctaaaaggagtatattttgggacctcccatattggaaagataacttgctcagacataatcttgatgt 33905290  T

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Target: chr2 (Bit Score: 79; Significance: 4e-37; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 44 - 210
Target Start/End: Original strand, 35596712 - 35596878
Alignment:
Q  44 acatcagaagaggtgtgcacaagagttagtgattatcctaaagtcacttattttggcataactgtcccaataccaggatacagagttgaccaccattgga 143  Q
    ||||||||||| ||||| ||||||||| |||||||||| ||||||||| ||| |||   | |||||||||||||| ||||| |||| |||||||| ||||    
T  35596712 acatcagaagaagtgtggacaagagtttgtgattatccaaaagtcactgattatggtcgagctgtcccaataccaagatacggagtagaccaccactgga 35596811  T
Q  144 cnnnnnnnngtatattttgggacctcccctattggaaagataacttgctcagacataatcctgatgt 210  Q
    |        ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  35596812 ctaaaaggagtatattttgggacctcccatattggaaagataacttgctcagacataatcttgatgt 35596878  T

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Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 44 - 210
Target Start/End: Complemental strand, 4965613 - 4965447
Alignment:
Q  44 acatcagaagaggtgtgcacaagagttagtgattatcctaaagtcacttattttggcataactgtcccaataccaggatacagagttgaccaccattgga 143  Q
    ||||||||||| ||||| ||||||||| |||||||||| ||||| ||| ||| |||   | |||||||||||||| ||||| |||| |||||||| ||||    
T  4965613 acatcagaagaagtgtggacaagagtttgtgattatccaaaagttactgattatggtcgagctgtcccaataccaagatacggagtagaccaccactgga 4965514  T
Q  144 cnnnnnnnngtatattttgggacctcccctattggaaagataacttgctcagacataatcctgatgt 210  Q
    |        ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  4965513 ctaaaaggagtatattttgggacctcccatattggaaagataacttgctcagacataatcttgatgt 4965447  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 153 - 210
Target Start/End: Complemental strand, 37367830 - 37367773
Alignment:
Q  153 gtatattttgggacctcccctattggaaagataacttgctcagacataatcctgatgt 210  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||    
T  37367830 gtatattttgggacctctcatattggaaagataacttgctcagacataatcttgatgt 37367773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 44 - 144
Target Start/End: Complemental strand, 37389325 - 37389225
Alignment:
Q  44 acatcagaagaggtgtgcacaagagttagtgattatcctaaagtcacttattttggcataactgtcccaataccaggatacagagttgaccaccattgga 143  Q
    ||||||||||| ||||| ||||||||| |||||||||| ||||||||| ||| |||   | |||||||||||||| ||||| |||||||||| || ||||    
T  37389325 acatcagaagaagtgtggacaagagtttgtgattatccaaaagtcactgattatggtcgagctgtcccaataccaagatacggagttgaccagcactgga 37389226  T
Q  144 c 144  Q
    |    
T  37389225 c 37389225  T

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