View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10605_low_17 (Length: 221)
Name: NF10605_low_17
Description: NF10605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10605_low_17 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 42445966 - 42445746
Alignment:
| Q |
1 |
gaaatttagttttgaattggtgttgttatccagggggaatggccatgccgctaggatgttcacgcctggtcctataatatccggtttcaatataccagga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42445966 |
gaaatttagttttgaattggtgttgttatccagggggaatggccatgccgccaggatgttcacgcctggtcctataatatccggtttcaatataccagga |
42445867 |
T |
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| Q |
101 |
ctcggcaagttgggacctcttgaagagaatgatgcaacggatggcgctaaggagttcccgataatcgttcccttaaacgaaatggttgctgtcggtgaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42445866 |
ctcggcaagttgggacctcttgaagagaatgatgcaacggatggcgctaaggagttcccgataatcgttcccttaaacgaaatggttgctgtcggtgaag |
42445767 |
T |
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| Q |
201 |
tggaatttatgtaggccttga |
221 |
Q |
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||||||||||||||||||||| |
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| T |
42445766 |
tggaatttatgtaggccttga |
42445746 |
T |
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