View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10605_low_2 (Length: 434)
Name: NF10605_low_2
Description: NF10605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10605_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 19 - 424
Target Start/End: Original strand, 45790600 - 45791012
Alignment:
| Q |
19 |
gtcaattatagatgtgaaattgattttgacttttgacacaataaatgtcatttgcataatattaataaaaatggcttactattagatgtgtgattactga |
118 |
Q |
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| T |
45790600 |
gtcaattatagatgtgaaattgattttgatttttgacacaataaatgtcatttgcatagtattaataaaaatggcttactattagatgtgtgattactga |
45790699 |
T |
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| Q |
119 |
tatgggtgcgtagatattgttgaagtaataatgaagcatcaaatgatgagagtatttttgtgtgtacacatttaatggaatagtagttctttgttttgat |
218 |
Q |
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| T |
45790700 |
tatgagtgtgtagatattgttgaagtaataatgaagcatcaaatgatgagagtatttttgtctgtacacatttaatggaatagtagttctttgttttgat |
45790799 |
T |
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| Q |
219 |
gcaaaagtcagtttacttttcggtcaagaaatcaattttactttgaaattaacatgctggtgaaaattcctaaaaagttggaaacttcaacttgatttcc |
318 |
Q |
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| T |
45790800 |
gcaaaagttagtttacttttcggtcaagaaatcaattttactttgaaattaacatgctggtgaaaattcctaaaaagttggaaacttcaacttgatttcc |
45790899 |
T |
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| Q |
319 |
aaagcattatatttaacacaatcaaacaaacttggttttgaatgcattaca-------ttgtaactgatatactctagaagttacagccaatgcattaca |
411 |
Q |
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| T |
45790900 |
aatgcattatatttaacacaatcaaacaaacttggttttgaatgcattacattgtaagttgtaactgatatactctagaagttacagccaatgcattaca |
45790999 |
T |
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| Q |
412 |
ttttctacctttg |
424 |
Q |
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| T |
45791000 |
ttttctacctttg |
45791012 |
T |
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