View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10605_low_4 (Length: 338)
Name: NF10605_low_4
Description: NF10605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10605_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 329
Target Start/End: Complemental strand, 45171517 - 45171206
Alignment:
| Q |
18 |
aatatagcaaataagtgacattttctattttgatttannnnnnncggggtgccagggtatcgaacttaattaggtcaccgagattgaagagcaaattttc |
117 |
Q |
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| T |
45171517 |
aatatagcaaataagtgacattttctattttgatttatttttttcggggtgccagagtatcgaacttaattaggtcaccgagattgaagagcaaattttc |
45171418 |
T |
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| Q |
118 |
aaccaagtgattctagggaaaccagcttttatgttaatttctcagctgtagattttaaatcaggattttgtatataaacatcttacaacttaggtgcata |
217 |
Q |
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| T |
45171417 |
aaccaagtgattctagggaaaccggcttttatgttaatttctcagctgtagattttaaatcaggattttgtatataaacatcttacaacttaggtgcata |
45171318 |
T |
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| Q |
218 |
agttcttagaagatgcatagattagtggcctattgcccacacagacacggagagggggaagggtggaaacctaggatcaaacccagacacccgcataaaa |
317 |
Q |
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| T |
45171317 |
agttcttagaagaggcatagattagtggcctattgcccacacagacacgaagagggggaagggtggaaacctaggatcaaacccagacacccgcataaaa |
45171218 |
T |
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| Q |
318 |
cgtcctctctgc |
329 |
Q |
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||||||| |||| |
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| T |
45171217 |
cgtcctcactgc |
45171206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 140
Target Start/End: Complemental strand, 54067605 - 54067553
Alignment:
| Q |
88 |
taggtcaccgagattgaagagcaaattttcaaccaagtgattctagggaaacc |
140 |
Q |
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| T |
54067605 |
taggccaccaaggttgaagaacaaattttcaaccaagtgattctagggtaacc |
54067553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 25210801 - 25210756
Alignment:
| Q |
90 |
ggtcaccgagattgaagagcaaattttcaaccaagtgattctaggg |
135 |
Q |
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| T |
25210801 |
ggtcaccaaggttgaagaacaaattttcaatcaagtgattctaggg |
25210756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 324
Target Start/End: Original strand, 4596759 - 4596815
Alignment:
| Q |
269 |
gagggggaagggtggaaa-cctaggatcaaacccagacacccgcataaaacgtcctc |
324 |
Q |
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| T |
4596759 |
gagggggaagggtggaaaacctgggatcaaacccaggcacccacatgaaacctcctc |
4596815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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