View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10605_low_5 (Length: 332)
Name: NF10605_low_5
Description: NF10605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10605_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 9e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 45684218 - 45683998
Alignment:
| Q |
19 |
gtcttcccctttaattctgagaaaaaacgaggtggtgttgctgtgaaactggtaatcccttgataaaattgtttaccaactcatcctttgatttaatgta |
118 |
Q |
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| T |
45684218 |
gtcttcccctttaattctgagaaaaaacgaggtggtgttgctgtgaaactggtaatcccttgataaaattgtttaccaactcatcctttgatctaatgta |
45684119 |
T |
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| Q |
119 |
ttctataatatttatcagacataaatatccatcgctttgtgc-ttttgatatttttgctctcacttttgaacctatttagtcttcgcacctgcannnnnn |
217 |
Q |
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| T |
45684118 |
ttctataatatttatcagacataaatatccatcgctttgtgctttttgatatttttgctctcacttttgaacctatttagtcttcgcgcctgcatttttt |
45684019 |
T |
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| Q |
218 |
nnggttactatttatggaatc |
238 |
Q |
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| T |
45684018 |
ttggttactatttatggaatc |
45683998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 259 - 321
Target Start/End: Complemental strand, 45683917 - 45683855
Alignment:
| Q |
259 |
cacttcgatgttgtttccatcgactttcatgtgctaattagaaacatttgttgtaatcttctt |
321 |
Q |
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| T |
45683917 |
cacttagatgttgtttccatcgactttcatgtgctaatcagaaacgtttgttgtaatcttctt |
45683855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 1443117 - 1443193
Alignment:
| Q |
31 |
aattctgagaaaaaacgaggtggtgttgctgtgaaactggtaatcccttgataaaattgtttaccaactcatccttt |
107 |
Q |
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| T |
1443117 |
aattccgagaaaaaacgaggcggtgttgctctgaagctggtaataatttgatcaaaatatttaccaattcatccttt |
1443193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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