View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10605_low_7 (Length: 317)
Name: NF10605_low_7
Description: NF10605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10605_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 34 - 298
Target Start/End: Original strand, 49277323 - 49277587
Alignment:
| Q |
34 |
tagaacacagataaatttgagacagatagtagacataaaggttgaatttcatttcacttatgacaagaaagggtggcaaatcttaaaacataacaagtac |
133 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49277323 |
tagaacacagataaatttgagacagatattagacataaaggttgaatttcatttcacttatgacaagaaagggtggcaaatcttaaaacataacaagtac |
49277422 |
T |
|
| Q |
134 |
tctctaaccacaaatacaatgtgtcaaactagacaccgctgaaatcttgattcttgttctgagtaaaagtggaagccttctgaaatctaacataataagg |
233 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49277423 |
tctctaaccacaaatacaatgtgccaaactagacaccgctgaaatcttgattcttgttctgagtaaaagtggaagccttctgaaatctaacataataagg |
49277522 |
T |
|
| Q |
234 |
ttcttcaataccagcaccaagagccataactttagttccatcagtatctacaaaagttccaacag |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49277523 |
ttcttcaataccagcaccaagagccataactttagttccatcagtatctacaaaagttccaacag |
49277587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 166 - 298
Target Start/End: Original strand, 49271538 - 49271670
Alignment:
| Q |
166 |
acaccgctgaaatcttgattcttgttctgagtaaaagtggaagccttctgaaatctaacataataaggttcttcaataccagcaccaagagccataactt |
265 |
Q |
| |
|
|||| ||| ||||||||||| ||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
49271538 |
acactgctcaaatcttgattattgctctgagcaaaagtggaagccttctgaaatctaacatagtaaggttcttcaataccatcaccaacagccataactt |
49271637 |
T |
|
| Q |
266 |
tagttccatcagtatctacaaaagttccaacag |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
49271638 |
tagttccatcagtatctacaaaagttccaacag |
49271670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 194 - 282
Target Start/End: Original strand, 49269115 - 49269206
Alignment:
| Q |
194 |
gagtaaaagtggaagccttctgaaatctaacataataaggttc---ttcaataccagcaccaagagccataactttagttccatcagtatct |
282 |
Q |
| |
|
|||||||||||||| || ||||||| ||||||||||||||||| ||| ||||| |||||| ||||||||||||||||||||| |||||| |
|
|
| T |
49269115 |
gagtaaaagtggaaaccctctgaaacctaacataataaggttcaagatcattaccatcaccaacagccataactttagttccatcggtatct |
49269206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University