View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10606_high_5 (Length: 237)
Name: NF10606_high_5
Description: NF10606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10606_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 54786604 - 54786382
Alignment:
| Q |
1 |
gtgcaacacaggttctctgccttctattctgtaagaccccattgtaatgatcattagcaagcaaactattatttttctaccaacttccattctttacaaa |
100 |
Q |
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| T |
54786604 |
gtgcaacacaggttctctgccttctattctgtaagaccccattgtaatgatcattagcaagcaaactattatttttctaccaacttccattctttacaaa |
54786505 |
T |
|
| Q |
101 |
accttcctagttcctatagtttaaagnnnnnnnaattttcaaatggacaaagagaacttaatttagttgcaaaattcatgtcacaagtgtgacgaaaatt |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54786504 |
accttcctagttcctatagtttaaagtttttttaattttcaaatggacaaagagaacttaatttagttgcaaaattcatgtcacaagtgtgacgaaaatt |
54786405 |
T |
|
| Q |
201 |
gaagccaaaatttatgtgattgt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
54786404 |
gaagccaaaatttatgtgattgt |
54786382 |
T |
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