View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10606_high_7 (Length: 229)
Name: NF10606_high_7
Description: NF10606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10606_high_7 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 50 - 229
Target Start/End: Original strand, 51480732 - 51480910
Alignment:
| Q |
50 |
cgatgaaactaataattattgaaccattaacaacattatgacaccggtctcgattatttgtcattttcttattggttatgttggaagttaaaggtgagag |
149 |
Q |
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| T |
51480732 |
cgatgaaactaataattattgatccattaacaacattatgacatcggtctcgattatttgtcattttcttactggttatgctggaagt-aaaggtgagag |
51480830 |
T |
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| Q |
150 |
agacttccgttaattatatgaacatttgtttttggtataagaacgacagtgagacatcaaatgatcaaaaccagttatat |
229 |
Q |
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| T |
51480831 |
agacttccgttaattatatgaacatttatttttggtataagaacgacagtgagacatcaaatgatcaaaatcagttatat |
51480910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 51475800 - 51475844
Alignment:
| Q |
7 |
ggagtgtcaagatagctcggttgtccagttgatcgtcgacaatcg |
51 |
Q |
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| T |
51475800 |
ggagtgtcaagatagctcggttgtccagttgatcatcgacaatcg |
51475844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 129
Target Start/End: Original strand, 51463221 - 51463256
Alignment:
| Q |
94 |
cggtctcgattatttgtcattttcttattggttatg |
129 |
Q |
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| T |
51463221 |
cggtctcgattatttgtcattttcttatcggttatg |
51463256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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