View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10606_low_10 (Length: 240)
Name: NF10606_low_10
Description: NF10606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10606_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 15 - 231
Target Start/End: Original strand, 37806350 - 37806566
Alignment:
| Q |
15 |
caattcattgcaagcactaaaaccaatcatcctaatgttgtttgtgcagattgcatatgctgctgtgaatatcatgtacaagctcgttataaatgatggg |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37806350 |
caattcattgcaagcactaaaaccaatcatcctaatgttgtttgtgcagattgcatatgctgctgtgaatatcatgtacaagctcgttataaatgatggg |
37806449 |
T |
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| Q |
115 |
atgagtatgagggttgcttctgcctaccgcctcgcttttgcatcagctttcactattcctcttgcttttatctttgataggttcattttgcttcatcact |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37806450 |
atgagtatgagggttgcttctgcctaccgcctcgcttttgcatcagctttcactattcctcttgcttttatctttgataggttcattttgcttcatcact |
37806549 |
T |
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| Q |
215 |
tcttattattgcctatg |
231 |
Q |
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|||||||||||| |||| |
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| T |
37806550 |
tcttattattgcttatg |
37806566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 19 - 173
Target Start/End: Original strand, 37796314 - 37796468
Alignment:
| Q |
19 |
tcattgcaagcactaaaaccaatcatcctaatgttgtttgtgcagattgcatatgctgctgtgaatatcatgtacaagctcgttataaatgatgggatga |
118 |
Q |
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| T |
37796314 |
tcattgcaaggactaaaaccagtcattgttatggtgtttgtgcagattgcatatgctgctatgaatatcatgtgcaagctcgttataaatgatgggatga |
37796413 |
T |
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| Q |
119 |
gtatgagggttgcttctgcctaccgcctcgcttttgcatcagctttcactattcc |
173 |
Q |
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| T |
37796414 |
gtatgagggttgcgactgcttaccgcctcatttgtgcatcagctttcactattcc |
37796468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 16 - 196
Target Start/End: Original strand, 37785669 - 37785849
Alignment:
| Q |
16 |
aattcattgcaagcactaaaaccaatcatcctaatgttgtttgtgcagattgcatatgctgctgtgaatatcatgtacaagctcgttataaatgatggga |
115 |
Q |
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||||||||| ||| | |||||||| | ||||||||||||||||||||||||||| ||| |||||||||||||| | |||||| | ||||||||||||| |
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| T |
37785669 |
aattcattggaaggagtaaaaccagtgatcctaatgttgtttgtgcagattgcaggtgcagctgtgaatatcatatgcaagcttgccataaatgatggga |
37785768 |
T |
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| Q |
116 |
tgagtatgagggttgcttctgcctaccgcctcgcttttgcatcagctttcactattcctcttgcttttatctttgataggt |
196 |
Q |
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|||| |||||||| || |||| ||||| ||| ||||||||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
37785769 |
tgagcatgagggtggccactgcttaccgtctcacttttgcatcagctttcaccattcctcttgctcttatctttgataggt |
37785849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 208
Target Start/End: Original strand, 37778544 - 37778737
Alignment:
| Q |
15 |
caattcattgcaagcactaaaaccaatcatcctaatgttgtttgtgcagattgcatatgctgctgtgaatatcatgtacaagctcgttataaatgatggg |
114 |
Q |
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|||||||||||||| |||||||||| | | ||||| || || |||||||||| |||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
37778544 |
caattcattgcaaggactaaaaccagtggtgttaatggtggtttgccagattgcatttgctgctgtgaatatcatgtacaagctcgtcataaacgatgga |
37778643 |
T |
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| Q |
115 |
atgagtatgagggttgcttctgcctaccgcctcgcttttgcatcagctttcactattcctcttgcttttatctttgataggttcattttgcttc |
208 |
Q |
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||||| |||||||| || | || ||||||||| ||||||| | ||||||||| |||| |||||| || ||||||||||| ||||||||||| |
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| T |
37778644 |
atgagcatgagggtggccaccgcttaccgcctcagttttgcagcggctttcactgttccccttgctgtttactttgataggtccattttgcttc |
37778737 |
T |
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