View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10606_low_11 (Length: 240)
Name: NF10606_low_11
Description: NF10606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10606_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 3965620 - 3965399
Alignment:
| Q |
2 |
cctcgcgcgtgtagaacttcaagagattgaggaagctctggtagagtttgcagctcaaggcaatatcttatgtctagatattgtagtcttatcaaattct |
101 |
Q |
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| T |
3965620 |
cctcgcgcgtgtagaacttcaagagattgaggaagctctggtagagtttgcagcttaaggcaatatcttatgtctagatattgcagtcttatcaaattct |
3965521 |
T |
|
| Q |
102 |
taaaacatgaaggaaaactttcaatggaacagtttcctaaatgtaggatttcaagcttggtttgacgtccaaacgatgcaggcaatgcattgatttgtgt |
201 |
Q |
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| T |
3965520 |
taaaacatgaaggaaatctttcaatggaacagtttcctaaatgtaggatttcaagcttggtttgacgtccaaatgatgcaggcaatgcattgatttgtgt |
3965421 |
T |
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| Q |
202 |
gtattgtaaatccagctctatc |
223 |
Q |
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| T |
3965420 |
gtattgtaaatccaactctatc |
3965399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 6 - 220
Target Start/End: Original strand, 4016697 - 4016911
Alignment:
| Q |
6 |
gcgcgtgtagaacttcaagagattgaggaagctctggtagagtttgcagctcaaggcaatatcttatgtctagatattgtagtcttatcaaattcttaaa |
105 |
Q |
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| T |
4016697 |
gcgcgagtagaatttcaagagatggaggaagcactggtagattttgcagtttctgacaatatcttacctctagatattgtagttttattagattcttaaa |
4016796 |
T |
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| Q |
106 |
acatgaaggaaaactttcaatggaacagtttcctaaatgtaggatttcaagcttggtttgacgtccaaacgatgcaggcaatgcattgatttgtgtgtat |
205 |
Q |
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| T |
4016797 |
acatgaaggaaaattttcaatggaacaatttcctaaatgtaggatttcaagcttgctttgacatccaaatgatgcaggcaatgtattcacttgagtgtat |
4016896 |
T |
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| Q |
206 |
tgtaaatccagctct |
220 |
Q |
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| T |
4016897 |
cgtaaatccagctct |
4016911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 12 - 216
Target Start/End: Complemental strand, 3948609 - 3948404
Alignment:
| Q |
12 |
gtagaacttcaagagattgaggaagctctggtagagtttgcagctcaaggcaatatcttatgtctagatattgtagtcttat--caaattcttaaaacat |
109 |
Q |
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|||||| ||||||||||||||| || ||||| ||| ||||||| | | ||||| |||||||| ||||||||||||| ||||| || ||||||||||||| |
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| T |
3948609 |
gtagaatttcaagagattgaggtaggtctggcagactttgcagtttatggcaacatcttatggctagatattgtagccttatatcatattcttaaaacat |
3948510 |
T |
|
| Q |
110 |
gaaggaaaactttcaatggaacagtttcctaaatgtaggatttcaagcttggtttgacgtccaaacgatgcaggcaatgcattgatttgtgtgtattgta |
209 |
Q |
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| T |
3948509 |
aaaggaaaattttca-tgaaacagtatcctaaatgtagggtttcaagctttctttgacatccaaacaatgcaggcattacattaacttgtgtgtatcgta |
3948411 |
T |
|
| Q |
210 |
aatccag |
216 |
Q |
| |
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||||||| |
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| T |
3948410 |
aatccag |
3948404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 3804361 - 3804545
Alignment:
| Q |
19 |
ttcaagagattgaggaagctctggtagagtttgcagctcaaggcaatatcttatgtctagatattgtagtcttatcaaattcttaaaacatgaaggaaaa |
118 |
Q |
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||||||||||||||||||||||| ||||||| ||| | | ||||| ||| ||||||||||| ||||||||||||| |||||| ||||||||||||||| |
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| T |
3804361 |
ttcaagagattgaggaagctctgacagagttttcagtttatggcaacatcaaatgtctagatactgtagtcttatcagattctt-aaacatgaaggaaaa |
3804459 |
T |
|
| Q |
119 |
ctttcaatggaacagtttcctaaatgtaggatttcaagcttggtttgacgtccaaacgatgcaggcaatgcattgatttgtgtgtat |
205 |
Q |
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| T |
3804460 |
ttttc-atgaaacattatcctaaatgtaggattttaagttttctttgacatccaaacaatgcaggcaaaacattgactagtgtgtat |
3804545 |
T |
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