View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10606_low_13 (Length: 232)
Name: NF10606_low_13
Description: NF10606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10606_low_13 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 51480917 - 51481148
Alignment:
| Q |
1 |
tgaaaggaggtatattttcgcagcaatgtatgaattcatatatatgattcccacatatgtgaagctaaaaatattgaataaaacttcttattgattagat |
100 |
Q |
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| T |
51480917 |
tgaaaggaggtatattttcgcagcaatgtatgaattcatatatatgattcccacatatgtgaagctaaaaatattgaataaaacttcttattgattagat |
51481016 |
T |
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| Q |
101 |
caagagaagcaaagcaagagttcnnnnnnnattactatagatcctttagtatctcattcttattttttattattacatgatagcatagaaactaatatgg |
200 |
Q |
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| T |
51481017 |
caagagaagcaaagcaggagttctttttttattactatagatcatttaatatctcattcttattttttactattacatgagaggatagaaactaatatgg |
51481116 |
T |
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| Q |
201 |
tcattataactttattatagtgtagataacct |
232 |
Q |
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| T |
51481117 |
tcattataactttattatagtgtagataacct |
51481148 |
T |
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Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 94 - 180
Target Start/End: Original strand, 51463784 - 51463870
Alignment:
| Q |
94 |
attagatcaagagaagcaaagcaagagttcnnnnnnnattactatagatcctttagtatctcattcttattttttattattacatga |
180 |
Q |
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| T |
51463784 |
attagatcaagagaagcaaagcaatagttcattttttattattatagatcctttaatatcttattcttattttttattgttacatga |
51463870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 204
Target Start/End: Original strand, 48423080 - 48423147
Alignment:
| Q |
139 |
agatcctttagtatctcattctta--ttttttattattacatgatagcatagaaactaatatggtcat |
204 |
Q |
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| T |
48423080 |
agattctttaatatctcattcttattttttttattattacatgagagtatagaagctaaaaaggtcat |
48423147 |
T |
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