View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10606_low_2 (Length: 375)
Name: NF10606_low_2
Description: NF10606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10606_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 31 - 371
Target Start/End: Complemental strand, 3965962 - 3965622
Alignment:
| Q |
31 |
agcaaaggggaacgcgatgtagaagaagataaatcaatgactacataatctattgttgtcatatactcaaaccactttggaacactgtttcctggataca |
130 |
Q |
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| T |
3965962 |
agcaaaggggaacttgatgtagaagaagatagatcaatgactacataatccgttgttgtcatatactcaaaccactctggaacgctgtttcctggataca |
3965863 |
T |
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| Q |
131 |
cgtaaagtgcttgataagaatcattgtgatccttataatcattgaacttattatgaaaatcatggtctgaagctgatacatgttggtatgcgaatttcat |
230 |
Q |
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| T |
3965862 |
cgtaaattgcttgataagaatcattgtgatccttataatcattgaacttattatgaaaatcatgttccaaagctgatacatgttggcatgcaaatttcat |
3965763 |
T |
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| Q |
231 |
aatgtttatttgtgcattgagcacaatatttgtaagtgaatgttcatccaatttcaagcaattcgcgaatacaaccctattcctgttctccttgaattgt |
330 |
Q |
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| T |
3965762 |
attgtttatttgcgcattaaacgcaatatttgcaagagaatgttcatccaatttcaagcaattcgcgaatacaaccctatacctgttctccttgaattgt |
3965663 |
T |
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| Q |
331 |
tcaggaattgaagggaacaacacagtctctagtgatgtgca |
371 |
Q |
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| T |
3965662 |
tcaggaattgaagggaacaacacactctctagtgatgtgca |
3965622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 31 - 351
Target Start/End: Complemental strand, 3948947 - 3948627
Alignment:
| Q |
31 |
agcaaaggggaacgcgatgtagaagaagataaatcaatgactacataatctattgttgtcatatactcaaaccactttggaacactgtttcctggataca |
130 |
Q |
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| T |
3948947 |
agcaaaggggaacgcggtgtagaagaagatagatccatgactacaaaatccgttgttgtcttatacacgaaccactttggaacactgctccctggataca |
3948848 |
T |
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| Q |
131 |
cgtaaagtgcttgataagaatcattgtgatccttataatcattgaacttattatgaaaatcatggtctgaagctgatacatgttggtatgcgaatttcat |
230 |
Q |
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| T |
3948847 |
cataaatagcttgataagattcaatgtgaacgttataatcattgaacttattatgaaaatcctgttctgaagctgataaatgttggtatgcaaatttcag |
3948748 |
T |
|
| Q |
231 |
aatgtttatttgtgcattgagcacaatatttgtaagtgaatgttcatccaatttcaagcaattcgcgaatacaaccctattcctgttctccttgaattgt |
330 |
Q |
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| T |
3948747 |
aatgtttatttgcaaattaaacacaatattcgcgagagaatgttcatccaatttcaagcaattcgcaaacacaacccttttcatgttctccttgcattgt |
3948648 |
T |
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| Q |
331 |
tcaggaattgaagggaacaac |
351 |
Q |
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|||| |||||||||||||||| |
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| T |
3948647 |
tcagaaattgaagggaacaac |
3948627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 38 - 372
Target Start/End: Original strand, 4016361 - 4016692
Alignment:
| Q |
38 |
gggaacgcgatgtagaagaagataaatcaatgactacataatctattgttgtcatatactcaaaccactttggaacactgtttcctggatacacgtaaag |
137 |
Q |
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| T |
4016361 |
gggaatgcgatgtagaagaaggtagatcaatggctacataatccgttgttgtcttatattcaaaccaatctggaacacagctccctggatacacataaag |
4016460 |
T |
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| Q |
138 |
tgcttgataagaatcattgtgatccttataatcattgaacttattatgaaaatcatggtct-gaagctgatacatgttggtatgcgaatttcataatgtt |
236 |
Q |
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| T |
4016461 |
tgcttgatgagaatcatctt---cgttataattgttgaacttattgtgaaattcatc-tctagaagctgatacatgttggtatgcaaatttggtaatgtt |
4016556 |
T |
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| Q |
237 |
tatttgtgcattgagcacaatatttgtaagtgaatgttcatccaatttcaagcaattcgcgaatacaaccctattcctgttctccttgaattgttcagga |
336 |
Q |
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| T |
4016557 |
tatttgagcattaaacacaatatttgcgagtgaatgctcgtccaatttcaagcaattcgcaaacacaacccttttcctgttctccttgaattgttcagca |
4016656 |
T |
|
| Q |
337 |
attgaagggaacaacacagtctctagtgatgtgcac |
372 |
Q |
| |
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|||||||||||||||||||||| |||| ||||||| |
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| T |
4016657 |
attgaagggaacaacacagtcttcagtgctgtgcac |
4016692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 204 - 375
Target Start/End: Original strand, 3804171 - 3804342
Alignment:
| Q |
204 |
tgatacatgttggtatgcgaatttcataatgtttatttgtgcattgagcacaatatttgtaagtgaatgttcatccaatttcaagcaattcgcgaataca |
303 |
Q |
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|||||||||||||||||| ||||||| ||||||| |||| ||||| | ||| |||| | | || | |||||||||||| ||||||||||| || ||| |
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| T |
3804171 |
tgatacatgttggtatgcaaatttcagaatgtttctttgcgcattaaatacagtattcgagggagattattcatccaattttaagcaattcgcaaacaca |
3804270 |
T |
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| Q |
304 |
accctattcctgttctccttgaattgttcaggaattgaagggaacaacacagtctctagtgatgtgcaccct |
375 |
Q |
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| T |
3804271 |
acccttttcatgttctccttgcattgttcagaaattgaagggaacaacccagtttctagtaatgtgcaccct |
3804342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 254 - 366
Target Start/End: Complemental strand, 3921937 - 3921822
Alignment:
| Q |
254 |
caatatttgtaagtgaatgttcatccaatttcaagcaattcgcgaatacaaccctattcctgttctccttgaattgttcaggaa---ttgaagggaacaa |
350 |
Q |
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|||||||| | || ||| |||||||||| || ||||||||| ||| ||||||| ||| |||| |||||||||||||||| || ||||||||||||| |
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| T |
3921937 |
caatatttatcagagaaagttcatccaagttgaagcaattccagaactcaacccttttcttgttttccttgaattgttcagcaactgttgaagggaacaa |
3921838 |
T |
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| Q |
351 |
cacagtctctagtgat |
366 |
Q |
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| T |
3921837 |
tacagtctttagtgat |
3921822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 153
Target Start/End: Complemental strand, 3922112 - 3922041
Alignment:
| Q |
82 |
attgttgtcatatactcaaaccactttggaacactgtttcctggatacacgtaaagtgcttgataagaatca |
153 |
Q |
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||||||||| | ||||| ||||||||||||||||| |||| |||||||| || | |||||||||||||||| |
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| T |
3922112 |
attgttgtcttgtactccaaccactttggaacactacttccaggatacacatacactgcttgataagaatca |
3922041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 358
Target Start/End: Original strand, 4023297 - 4023404
Alignment:
| Q |
254 |
caatatttgtaagtgaatgttcatccaatttcaagcaattcgcgaatacaaccctattcctgttctccttgaattgttcaggaa---ttgaagggaacaa |
350 |
Q |
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| T |
4023297 |
caatatttatgagagaatgttcatccaagttccagcaattccagaactcaatccttttcttgttttccttgaattgttcagaaactgttgaagggaacaa |
4023396 |
T |
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| Q |
351 |
cacagtct |
358 |
Q |
| |
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| T |
4023397 |
tacagtct |
4023404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 268 - 358
Target Start/End: Original strand, 4000395 - 4000488
Alignment:
| Q |
268 |
gaatgttcatccaatttcaagcaattcgcgaatacaaccctattcctgttctccttgaattgttcaggaa---ttgaagggaacaacacagtct |
358 |
Q |
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|||||||||||||| || ||||||||| ||| ||| ||| ||| |||| |||||||||||||||| || ||||||||||||| ||||||| |
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| T |
4000395 |
gaatgttcatccaagttgaagcaattccagaactcaatccttttcttgttttccttgaattgttcagaaattgttgaagggaacaatacagtct |
4000488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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