View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10606_low_3 (Length: 346)
Name: NF10606_low_3
Description: NF10606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10606_low_3 |
 | |
|
| [»] scaffold0171 (3 HSPs) |
| | |
|
| [»] scaffold0181 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 19 - 341
Target Start/End: Original strand, 24940960 - 24941282
Alignment:
| Q |
19 |
caaagaccgttttatttgttaacttatggtcgatgggcagggacccgaacctgtgggaaaacccacttgagttcaggccagagaggtttatgagtgaaga |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
24940960 |
caaagaccgttttatttgttaacttatggtcgatgggcagggacccgaacctgtgggaaaacccacttgagttcaggccagagaggtttatgagtgagga |
24941059 |
T |
|
| Q |
119 |
agataataagtttgatgtgaggggacaaaatttccaacttatgccatttggaagtggtagaagggcttgccctggtgccactttagcacttcaagttgtt |
218 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24941060 |
agataataagttcgatgcgaggggacaaaatttccaacttatgccatttggaagtggtagaagggcttgccctggtgccactttagcacttcaagttgtt |
24941159 |
T |
|
| Q |
219 |
cccacaaatcttgctgcaatgattcagtgttttgaatggaatgttgatggtaatgggaaagttaacatggaagagaaaccggcggtgacccttccaaggg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || || ||||||||||||| |
|
|
| T |
24941160 |
cccacaaatcttgctgcaatgattcagtgttttgaatggaatgttgatggtaatgggaaagttaacatggaagagaaatccgctgtaacccttccaaggg |
24941259 |
T |
|
| Q |
319 |
ctcatcctttgatctgtgctcct |
341 |
Q |
| |
|
||||||||||||| |||| |||| |
|
|
| T |
24941260 |
ctcatcctttgatttgtgttcct |
24941282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 19 - 341
Target Start/End: Original strand, 25169396 - 25169718
Alignment:
| Q |
19 |
caaagaccgttttatttgttaacttatggtcgatgggcagggacccgaacctgtgggaaaacccacttgagttcaggccagagaggtttatgagtgaaga |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| || ||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
25169396 |
caaagaccgttttatttgttaacttatggtcaatgggtagagaccccaaattgtgggaaaacccacttgagttcaggccagagaggtttatgtgtgaaga |
25169495 |
T |
|
| Q |
119 |
agataataagtttgatgtgaggggacaaaatttccaacttatgccatttggaagtggtagaagggcttgccctggtgccactttagcacttcaagttgtt |
218 |
Q |
| |
|
| |||| ||||| ||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
25169496 |
aaataacaagttcgatatgagggggcaaaatttccaacttatgccatttggaactggtagaagggcttgccctggttacttattagcacttcaagttgtt |
25169595 |
T |
|
| Q |
219 |
cccacaaatcttgctgcaatgattcagtgttttgaatggaatgttgatggtaatgggaaagttaacatggaagagaaaccggcggtgacccttccaaggg |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
25169596 |
cccacaaatcttgctgcaatgattcagtgttttgaatggaatgttgatggtaatgggaaagttgacatggaagagaaaccggccgtgacccttccaaggg |
25169695 |
T |
|
| Q |
319 |
ctcatcctttgatctgtgctcct |
341 |
Q |
| |
|
||||||||||||| |||| |||| |
|
|
| T |
25169696 |
ctcatcctttgatttgtgttcct |
25169718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 28 - 220
Target Start/End: Complemental strand, 38807799 - 38807610
Alignment:
| Q |
28 |
ttttatttgttaacttatggtcgatgggcagggacccgaacctgtgggaaaacccacttgagttcaggccagagaggttt-atgagtgaagaagataata |
126 |
Q |
| |
|
||||||||||||| || || | |||| |||||| | || |||||||| || ||||||||||| ||||| ||||||||| |||||||||| |||| |
|
|
| T |
38807799 |
ttttatttgttaatttgtgaacaatggatagggactcaaaactgtgggagaatccacttgagtttaggcc-gagaggttttatgagtgaagtg---aata |
38807704 |
T |
|
| Q |
127 |
agtttgatgtgaggggacaaaatttccaacttatgccatttggaagtggtagaagggcttgccctggtgccactttagcacttcaagttgttcc |
220 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||| |||||||||| ||| ||||| ||||||||||||| | | |||||||||||||||||||| |
|
|
| T |
38807703 |
agttagatgtgaggggacaaaatttccaatttataccatttggaactggaagaagagcttgccctggtgtctcattagcacttcaagttgttcc |
38807610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171 (Bit Score: 143; Significance: 4e-75; HSPs: 3)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 28 - 336
Target Start/End: Original strand, 11969 - 12274
Alignment:
| Q |
28 |
ttttatttgttaacttatggtcgatgggcagggacccgaacctgtgggaaaacccacttgagttcaggccagagaggtttatgagtgaagaagataataa |
127 |
Q |
| |
|
||||||||||||| || ||||| ||||| |||||||| || ||||||| || ||| |||||| | || |||||||||||||||||||| ||||| |
|
|
| T |
11969 |
ttttatttgttaatttgtggtcaatgggaagggacccaaaattgtgggagaatccatatgagtttaaaccggagaggtttatgagtgaagag---aataa |
12065 |
T |
|
| Q |
128 |
gtttgatgtgaggggacaaaatttccaacttatgccatttggaagtggtagaagggcttgccctggtgccactttagcacttcaagttgttcccacaaat |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| ||| ||| ||| |||||| |||||| | ||||||||||||| |||||| |||||| |
|
|
| T |
12066 |
gtttgatgtgaggggacaaaatttccaacttatgccattcggaactggaagacggggttgccccggtgcctcattagcacttcaagctgttccaacaaat |
12165 |
T |
|
| Q |
228 |
cttgctgcaatgattcagtgttttgaatggaatgttgatggtaatgggaaagttaacatggaagagaaaccggcggtgacccttccaagggctcatcctt |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||| |||| | ||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
12166 |
cttgctgcaatgattcagtgttttgaatggaaagttggtggtgatggaacagttaacatggaagagaaaccttcaaccacccttccaagggctcatcctt |
12265 |
T |
|
| Q |
328 |
tgatctgtg |
336 |
Q |
| |
|
|||| |||| |
|
|
| T |
12266 |
tgatatgtg |
12274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 28 - 336
Target Start/End: Original strand, 19755 - 20060
Alignment:
| Q |
28 |
ttttatttgttaacttatggtcgatgggcagggacccgaacctgtgggaaaacccacttgagttcaggccagagaggtttatgagtgaagaagataataa |
127 |
Q |
| |
|
|||||||| ||| || ||||| ||||| |||||||| || ||||||| || ||| |||||| | ||||||||||||||||||||||| ||||| |
|
|
| T |
19755 |
ttttatttagtaatttgtggtccatgggaagggacccaaaattgtgggagaatccatatgagtttaaaccagagaggtttatgagtgaagag---aataa |
19851 |
T |
|
| Q |
128 |
gtttgatgtgaggggacaaaatttccaacttatgccatttggaagtggtagaagggcttgccctggtgccactttagcacttcaagttgttcccacaaat |
227 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| ||| || ||| ||||||||||||| | ||||||||||| | |||||| |||||| |
|
|
| T |
19852 |
gtttgatgtgaggggacaaaatttccaatttatgccatttggaactggaaggaggtcttgccctggtgcttcattagcacttcaggctgttccgacaaat |
19951 |
T |
|
| Q |
228 |
cttgctgcaatgattcagtgttttgaatggaatgttgatggtaatgggaaagttaacatggaagagaaaccggcggtgacccttccaagggctcatcctt |
327 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||| ||||||||| |||||||||||||| |||||| |||| || |||||||||||||||||||| |
|
|
| T |
19952 |
cttgccgcaatgattcagtgttttgaatggaaggttggtggtaatggaaaagttaacatggatgagaaagcggccacgagccttccaagggctcatcctt |
20051 |
T |
|
| Q |
328 |
tgatctgtg |
336 |
Q |
| |
|
|||| |||| |
|
|
| T |
20052 |
tgatttgtg |
20060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 72 - 336
Target Start/End: Original strand, 25648 - 25909
Alignment:
| Q |
72 |
tgggaaaacccacttgagttcaggccagagaggtttatgagtgaagaagataataagtttgatgtgaggggacaaaatttccaacttatgccatttggaa |
171 |
Q |
| |
|
|||||||| ||||||||||| | |||||||||||||||||||||| |||||||||||| | |||||||||||||||||| |||| ||||||||| |
|
|
| T |
25648 |
tgggaaaatccacttgagtttaaaccagagaggtttatgagtgaaggg---aataagtttgatctaaggggacaaaatttccaatttataccatttggat |
25744 |
T |
|
| Q |
172 |
gtggtagaagggcttgccctggtgccactttagcacttcaagttgttcccacaaatcttgctgcaatgattcagtgttttgaatggaatgttgatggtaa |
271 |
Q |
| |
|
||| ||||| ||||| |||||| || | || || |||||||||||||| |||||||||||||| || |||||||||||||||| ||| |||| |||||| |
|
|
| T |
25745 |
ttggaagaagagcttgtcctggtacctcattcgcgcttcaagttgttccaacaaatcttgctgctattattcagtgttttgaattgaaggttggtggtaa |
25844 |
T |
|
| Q |
272 |
tgggaaagttaacatggaagagaaaccggcggtgacccttccaagggctcatcctttgatctgtg |
336 |
Q |
| |
|
||| | ||||| ||||||||||||| | || ||||||||||||||||||||||||||| |||| |
|
|
| T |
25845 |
tggaacagttagcatggaagagaaagcttcgacgacccttccaagggctcatcctttgatgtgtg |
25909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0181 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0181
Description:
Target: scaffold0181; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 19 - 336
Target Start/End: Complemental strand, 9887 - 9573
Alignment:
| Q |
19 |
caaagaccgttttatttgttaacttatggtcgatgggcagggacccgaacctgtgggaaaacccacttgagttcaggccagagaggtttatgagtgaaga |
118 |
Q |
| |
|
||||||| ||||||||||| | || ||||| ||||| | ||| || || ||||||||||| || || ||||||| ||| ||||||||||||||||||| |
|
|
| T |
9887 |
caaagacaattttatttgttgatttgtggtcaatgggtaaggatcccaaactgtgggaaaatccgctcgagttcaagccggagaggtttatgagtgaagg |
9788 |
T |
|
| Q |
119 |
agataataagtttgatgtgaggggacaaaatttccaacttatgccatttggaagtggtagaagggcttgccctggtgccactttagcacttcaagttgtt |
218 |
Q |
| |
|
|||||||||||| | | |||||| ||||| ||| |||||||||||||| ||| |||||||||||||||||||| | ||||||||||||| |||| |
|
|
| T |
9787 |
g---aataagtttgattttaagggacagaatttgcaatatatgccatttggaactggaagaagggcttgccctggtgcttcattagcacttcaagctgtt |
9691 |
T |
|
| Q |
219 |
cccacaaatcttgctgcaatgattcagtgttttgaatggaatgttgatggtaatgggaaagttaacatggaagagaaaccggcggtgacccttccaaggg |
318 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||| | ||||| ||| |||| |||| | ||||||||||||||||||||| || |||||||||| |||| |
|
|
| T |
9690 |
ccaacaaatcttgctgcaatgattcaatgtttttattggaaggttagtggtgatggaacagttaacatggaagagaaaccagctttgacccttcctaggg |
9591 |
T |
|
| Q |
319 |
ctcatcctttgatctgtg |
336 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
9590 |
ctcatcctttgatgtgtg |
9573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 222 - 328
Target Start/End: Original strand, 36735471 - 36735580
Alignment:
| Q |
222 |
acaaatcttgctgcaatgattcagtgttttgaatggaatgttga---tggtaatgggaaagttaacatggaagagaaaccggcggtgacccttccaaggg |
318 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||| ||| | ||||||||||| ||||| |||||||||||||| | | |||||||| |||||| |
|
|
| T |
36735471 |
acaaatcttgctgctatgattcaatgttttgaatggaaggttaaaggtggtaatgggattgttaatatggaagagaaacctgggttgaccctttcaaggg |
36735570 |
T |
|
| Q |
319 |
ctcatccttt |
328 |
Q |
| |
|
|||||||||| |
|
|
| T |
36735571 |
ctcatccttt |
36735580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University