View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10606_low_4 (Length: 317)
Name: NF10606_low_4
Description: NF10606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10606_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 20 - 299
Target Start/End: Original strand, 16287394 - 16287673
Alignment:
| Q |
20 |
ggacgtatttataggattgtttatttgttcgtatattacggattttcttggtacgcatcctattgttggagcttttgtgttcggattgattttgcctcat |
119 |
Q |
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| T |
16287394 |
ggacgtatttataggattgtttatttgttcgtatattacggattttcttggtacgcatcctattgttggagcttttgtgttcggattgattttgcctcat |
16287493 |
T |
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| Q |
120 |
ggaaagtttgctgatatggttatggaaatgtcagatgactttgttactggtattctgtgtcctgtttacttttctggatttggttttaaactcgacttgc |
219 |
Q |
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| T |
16287494 |
ggaaagtttgctgatatggttatggaaatgtcagatgactttgttactggtattctgtgtcctgtttacttttctggatttggttttaaactcgacttgc |
16287593 |
T |
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| Q |
220 |
caatactttggaacacaccaaattcagttttaatgatgcttattatggttttgttatgcataccaaaagttttgagctct |
299 |
Q |
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| T |
16287594 |
cagtactttggaacacaccaaattcagttttaatgatgcttattatggttttgttatgcataccaaaagttttgagctct |
16287673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 20 - 299
Target Start/End: Complemental strand, 17262369 - 17262090
Alignment:
| Q |
20 |
ggacgtatttataggattgtttatttgttcgtatattacggattttcttggtacgcatcctattgttggagcttttgtgttcggattgattttgcctcat |
119 |
Q |
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| T |
17262369 |
ggacgtatttataggattgtttattttttcgtatattacggattttcttggtacgcatcctattgtcggagcttttgtgttcggattgattttgcctcat |
17262270 |
T |
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| Q |
120 |
ggaaagtttgctgatatggttatggaaatgtcagatgactttgttactggtattctgtgtcctgtttacttttctggatttggttttaaactcgacttgc |
219 |
Q |
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| T |
17262269 |
ggaaagtttgctgatatggttatggaaatgtcagatgactttgttactggtattctgtgtcctgtttacttttctggatttggttttaaactcgacttgc |
17262170 |
T |
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| Q |
220 |
caatactttggaacacaccaaattcagttttaatgatgcttattatggttttgttatgcataccaaaagttttgagctct |
299 |
Q |
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| T |
17262169 |
cagtactttggaacacaccaaattcagttttaatgatgcttattatggtttcgttatgcataccaaaagttttgagctct |
17262090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 80 - 139
Target Start/End: Original strand, 13651706 - 13651765
Alignment:
| Q |
80 |
tattgttggagcttttgtgttcggattgattttgcctcatggaaagtttgctgatatggt |
139 |
Q |
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| T |
13651706 |
tattgtcggagcttttgtgtacgggttgattttgcctcatggtaaatttgctgatatggt |
13651765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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