View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10606_low_6 (Length: 309)
Name: NF10606_low_6
Description: NF10606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10606_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 6 - 294
Target Start/End: Complemental strand, 38033759 - 38033471
Alignment:
| Q |
6 |
agagtgaaagttttgatgggagttgttgaatgcatgctatatcttcatgaggagtggcctgaagttgattacgatctcaagacaagtagtgttttgttat |
105 |
Q |
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| T |
38033759 |
agagtgaaagttttgatgggagttgttgaatgcatgctatatcttcatgaggagtggcctgaagttgattacgatctcaagacaagtagtgttttgttat |
38033660 |
T |
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| Q |
106 |
ctgataaactagaaccattgatttcaaggtttcaagttggagaaagaaacaacagtagaagaagtaagaatctctatcactttattaatttataatggca |
205 |
Q |
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| T |
38033659 |
ctgataaactagaaccattgatttcaaggtttcaagttggagaaagaaacaacagtagaagaagtaagaatctctatcactttattaatttataatggca |
38033560 |
T |
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| Q |
206 |
atatcatgttttggtgcgcacaatttctttcaaatagttgagagtcgcacgttagattaaggcagattaccctccacacttcaaatata |
294 |
Q |
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| T |
38033559 |
atatcatgttttggtgcgcacaatttctttcaaatagttgagagtcgcacgttagattaaggcagattaccctccacacttcaaatata |
38033471 |
T |
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Back To:
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Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 121 - 183
Target Start/End: Complemental strand, 22628481 - 22628419
Alignment:
| Q |
121 |
cattgatttcaaggtttcaagttggagaaagaaacaacagtagaagaagtaagaatctctatc |
183 |
Q |
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| T |
22628481 |
cattgatttcaaggtttcaagttggagaaagaaacaacactcgaaaaagtaagaatctctatc |
22628419 |
T |
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