View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10607_low_11 (Length: 223)
Name: NF10607_low_11
Description: NF10607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10607_low_11 |
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| [»] chr6 (4 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 119; Significance: 6e-61; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 73 - 223
Target Start/End: Original strand, 31492763 - 31492913
Alignment:
| Q |
73 |
aacttaattgtttttacttttggaatatatattatatacctgctagcagatagactagacactctaacatgttcttctatccgcttttctttgcatttaa |
172 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31492763 |
aacttaattgtttttacttttggaatatatatcatatacctactagcagatagaatagacactctaacatgttcttctatccgcttttctttgcatttaa |
31492862 |
T |
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| Q |
173 |
ggtgtatttcataaaaatacctcatccgtcctaaattgtatgtcactttag |
223 |
Q |
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| T |
31492863 |
ggtgtatttgattaaaataccccatccgtcttaaattgtatgtcattttag |
31492913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 73 - 223
Target Start/End: Original strand, 31498152 - 31498302
Alignment:
| Q |
73 |
aacttaattgtttttacttttggaatatatattatatacctgctagcagatagactagacactctaacatgttcttctatccgcttttctttgcatttaa |
172 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31498152 |
aacttaattgtttttacttttggaatatatatcatatacctactagcagatagaatagacactctaacatgttcttctatccgcttttctttgcatttaa |
31498251 |
T |
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| Q |
173 |
ggtgtatttcataaaaatacctcatccgtcctaaattgtatgtcactttag |
223 |
Q |
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| T |
31498252 |
ggtgtatttgattaaaataccccatccgtcttaaattgtatgtcattttag |
31498302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 73 - 223
Target Start/End: Original strand, 31503539 - 31503689
Alignment:
| Q |
73 |
aacttaattgtttttacttttggaatatatattatatacctgctagcagatagactagacactctaacatgttcttctatccgcttttctttgcatttaa |
172 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31503539 |
aacttaattgtttttacttttggaatatatatcatatacctactagcagatagaatagacactctaacatgttcttctatccgcttttctttgcatttaa |
31503638 |
T |
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| Q |
173 |
ggtgtatttcataaaaatacctcatccgtcctaaattgtatgtcactttag |
223 |
Q |
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| T |
31503639 |
ggtgtatttgattaaaataccccatccgtcttaaattgtatgtcattttag |
31503689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Original strand, 17360604 - 17360632
Alignment:
| Q |
195 |
catccgtcctaaattgtatgtcactttag |
223 |
Q |
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| T |
17360604 |
catccgtcctaaattgtatgtcactttag |
17360632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Complemental strand, 4890215 - 4890187
Alignment:
| Q |
195 |
catccgtcctaaattgtatgtcactttag |
223 |
Q |
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| T |
4890215 |
catccgtcctaaattgtatgtcactttag |
4890187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Complemental strand, 13978501 - 13978473
Alignment:
| Q |
195 |
catccgtcctaaattgtatgtcactttag |
223 |
Q |
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| T |
13978501 |
catccgtcctaaattgtatgtcactttag |
13978473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 222
Target Start/End: Complemental strand, 20540530 - 20540502
Alignment:
| Q |
194 |
tcatccgtcctaaattgtatgtcacttta |
222 |
Q |
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| T |
20540530 |
tcatccgtcctaaattgtatgtcacttta |
20540502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Complemental strand, 29843938 - 29843910
Alignment:
| Q |
195 |
catccgtcctaaattgtatgtcactttag |
223 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
29843938 |
catccgtcctaaattgtatgtcactttag |
29843910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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