View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10607_low_14 (Length: 205)
Name: NF10607_low_14
Description: NF10607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10607_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 11 - 188
Target Start/End: Complemental strand, 3131226 - 3131049
Alignment:
| Q |
11 |
gagaagaatgaatggtacttagatctatgccgaaatggaacggttaagcgatctggtttcactctaaggtttgaccttatggtcctttttacaactggac |
110 |
Q |
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| T |
3131226 |
gagaagtatgaatggtacttagatctttgccgaaatggaacggttaaacgatctgggttcactctaaggtttgaccttatggtcctttttacaactggac |
3131127 |
T |
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| Q |
111 |
taagcaatgttagggatgttattccttttccaagaagctatgacaaggccaacaactaattgtattttggctaagatt |
188 |
Q |
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| T |
3131126 |
taagcaatgttagggatgttattccttttccaagaagctatgacaaggccaacaactaattgtattttggctaagatt |
3131049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 13 - 184
Target Start/End: Complemental strand, 3127814 - 3127643
Alignment:
| Q |
13 |
gaagaatgaatggtacttagatctatgccgaaatggaacggttaagcgatctggtttcactctaaggtttgaccttatggtcctttttacaactggacta |
112 |
Q |
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|||| ||||||||||||||||||| || |||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||| |||||||| |
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| T |
3127814 |
gaagtatgaatggtacttagatctttgttgaaatggaactgttaagcgatctgggttaactctaaggtttgaccttatggtcctttttacgactggactt |
3127715 |
T |
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| Q |
113 |
agcaatgttagggatgttattccttttccaagaagctatgacaaggccaacaactaattgtattttggctaa |
184 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
3127714 |
agcaatgttagggatgttattccttttccaagaagctatgacgaggtcaacaactaattgtattttggctaa |
3127643 |
T |
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