View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10607_low_2 (Length: 346)
Name: NF10607_low_2
Description: NF10607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10607_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 335
Target Start/End: Original strand, 41207977 - 41208292
Alignment:
| Q |
18 |
atcacttcacttgttaacacattgtgctaaaccaatctaacatatcttaatgttgttattgttgatgctgcttgattttttcatcacttaccttataacc |
117 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
41207977 |
atcacttcacttgttaacacattgtgttaaaccaatctaacatatcttaatgttgttattgttgatgctgcttgattttttcatcacttactttataacc |
41208076 |
T |
|
| Q |
118 |
ttaaccttgtttttcttcc----nnnnnnnnncactatagttgtctccttatttgcatgctaccattgttcttattgttataacatcaaacatatatgta |
213 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41208077 |
ttaaccttgtttttcttcctttttttttctctcactatagttgtctccttatttgcatgctaccattgttcttattgttataacatcaaacatatatgta |
41208176 |
T |
|
| Q |
214 |
acggtccatcattctctaaggtttgtgttg-ttgatttataagtgttgtgttattactctctctatatatatgtgcatatattatgaatttatgatagtg |
312 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||| ||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
41208177 |
acggtccatcattctct-aggtttgtgttgtttgacttataagtgttgtcttattactc------tatatatgtatatatattatgaatttatgatagtg |
41208269 |
T |
|
| Q |
313 |
atgaatcttgttttggttttctt |
335 |
Q |
| |
|
||||||| ||||||||||||||| |
|
|
| T |
41208270 |
atgaatcgtgttttggttttctt |
41208292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 55 - 335
Target Start/End: Original strand, 41198025 - 41198313
Alignment:
| Q |
55 |
taacatatcttaatgttgttattgttgatgctgcttgattttttcatcacttaccttataaccttaaccttgtttttcttccnnnnnnnnncactata-- |
152 |
Q |
| |
|
|||||| ||||| ||||||||||||| || | ||| | ||||||||||||||||||||||||||||||||||||||||||| || | | |
|
|
| T |
41198025 |
taacatgtcttattgttgttattgttcttgtttctttaatttttcatcacttaccttataaccttaaccttgtttttcttccttttattttcatttttca |
41198124 |
T |
|
| Q |
153 |
-----gttgtctccttatttgcatgctaccattgttcttattgttataacatcaaacatatatgt-aacggtccatcattctctaaggtttgtgttgttg |
246 |
Q |
| |
|
||| |||| || ||||||||||||||| |||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
41198125 |
acaaggttctctcatttcttgcatgctaccattattcttattgttataacatcaaaaatatatgttaactgtccatcattctctaaggtttgtgttgttg |
41198224 |
T |
|
| Q |
247 |
atttataagtgttgtgttattactctctctatatatatgtgcatatattatgaatttatgatagtgatgaatcttgttttggttttctt |
335 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41198225 |
atttataagtattgtgttattactctctctatatatatgtgcatatattatgaatttatgatagtgatgaatcttgttttggttttctt |
41198313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University