View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10607_low_5 (Length: 262)
Name: NF10607_low_5
Description: NF10607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10607_low_5 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 33073407 - 33073166
Alignment:
| Q |
18 |
gattttggttgctaatttgagtcaactcaccatggttcacattgagaaggattgcaaatgtttttgcaacatttcccaaaacatccttcattgtatttgt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33073407 |
gattttggttgctaatttgagtcaactcaccatggttcacgttgagaaggattgcaaatgtttttgcaacatttcccaaaacacccttcattgtatttgt |
33073308 |
T |
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| Q |
118 |
tattgaaaatcctagtttttattagtaaccaattgtatataataatcagggcccacaatataaaacttaacaggtaactttggctttcaatcagaaccac |
217 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33073307 |
tattgaaaattctagtttttattagtaaccaattgtatataataattagggcccacaatataaaacttaacaggtaactttggctttcaatcagaaccac |
33073208 |
T |
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| Q |
218 |
taattagtttataataaatcctatggctgcctttgcttctcc |
259 |
Q |
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| T |
33073207 |
tcattagtttataataaatcctatggctgccattgattctcc |
33073166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 18 - 259
Target Start/End: Original strand, 36984736 - 36984975
Alignment:
| Q |
18 |
gattttggttgctaatttgagtcaactcaccatggttcacattgagaaggattgcaaatgtttttgcaacatttcccaaaacatccttcattgtatttgt |
117 |
Q |
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||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
36984736 |
gattttgattgctaatttgagtcaactcaccatggttaacgttgagaaggattgcaaatgtttttgcaacatttcccaaaacacccttcattgtatttgt |
36984835 |
T |
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| Q |
118 |
tattgaaaatcctagtttttattagtaaccaattgtatataataatcagggcccacaatataaaacttaacaggtaactttggctttcaatcagaaccac |
217 |
Q |
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|||||||| | ||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
36984836 |
tattgaaagttctagtttttattagtaa--aattgtatataataattagggcctacaatataaaacttaacaggtaactttgactttcaatcagaaccac |
36984933 |
T |
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| Q |
218 |
taattagtttataataaatcctatggctgcctttgcttctcc |
259 |
Q |
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| T |
36984934 |
tcattaatttataataaatcttatggctgccattgattctcc |
36984975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 18 - 259
Target Start/End: Original strand, 37010175 - 37010414
Alignment:
| Q |
18 |
gattttggttgctaatttgagtcaactcaccatggttcacattgagaaggattgcaaatgtttttgcaacatttcccaaaacatccttcattgtatttgt |
117 |
Q |
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||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
37010175 |
gattttgattgctaatttgagtcaactcaccatggttaacgttgagaaggattgcaaatgtttttgcaacatttcccaaaacacccttcattgtatttgt |
37010274 |
T |
|
| Q |
118 |
tattgaaaatcctagtttttattagtaaccaattgtatataataatcagggcccacaatataaaacttaacaggtaactttggctttcaatcagaaccac |
217 |
Q |
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|||||||| | ||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
37010275 |
tattgaaagttctagtttttattagtaa--aattgtatataataattagggcctacaatataaaacttaacaggtaactttgactttcaatcagaaccac |
37010372 |
T |
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| Q |
218 |
taattagtttataataaatcctatggctgcctttgcttctcc |
259 |
Q |
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| |||| ||||||||||||| |||||||||| ||| |||||| |
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| T |
37010373 |
tcattaatttataataaatcttatggctgccattgattctcc |
37010414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 75 - 257
Target Start/End: Original strand, 304728 - 304909
Alignment:
| Q |
75 |
atgtttttgcaacatttcccaaaacatccttcattgtatt-tgttattgaaaatcctagtttttattagtaaccaattgtatataataatcagggcccac |
173 |
Q |
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||||||||||||||||||| |||||||||||||||||||| ||||||| || | | | |||||||||||||| |||| |||||||||| |||||||||| |
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| T |
304728 |
atgtttttgcaacatttccaaaaacatccttcattgtattgtgttattcgaagttccaatttttattagtaacaaattatatataataa-cagggcccac |
304826 |
T |
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| Q |
174 |
aatataaaacttaacaggtaactttggctttcaatcagaaccactaattagtttataataaatcctatggctgcctttgcttct |
257 |
Q |
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||| ||||||||| |||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||| || |||||||| |
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| T |
304827 |
tatacaaaacttaataggtaa-tttggctttcaatcagaaccactcattaatttataataaatcctatggctaccattgcttct |
304909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 133 - 257
Target Start/End: Original strand, 20072993 - 20073114
Alignment:
| Q |
133 |
tttttattagtaaccaattgtatataataatcagggcccacaatataaaacttaacaggtaactttggctttcaatcagaaccactaattagtttataat |
232 |
Q |
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||||||||||||| |||| |||||||||| |||||||||| |||||||||||||| ||||| ||||||||||||||||||||||| |||| ||||| || |
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| T |
20072993 |
tttttattagtaataaattttatataataa-cagggcccactatataaaacttaactggtaa-tttggctttcaatcagaaccactcattaatttat-at |
20073089 |
T |
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| Q |
233 |
aaatcctatggctgcctttgcttct |
257 |
Q |
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||||||||||||| || |||||||| |
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| T |
20073090 |
aaatcctatggctaccattgcttct |
20073114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 114
Target Start/End: Original strand, 20072079 - 20072115
Alignment:
| Q |
78 |
tttttgcaacatttcccaaaacatccttcattgtatt |
114 |
Q |
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|||||||||||||||| |||||||||||||||||||| |
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| T |
20072079 |
tttttgcaacatttccaaaaacatccttcattgtatt |
20072115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 41 - 245
Target Start/End: Original strand, 25057252 - 25057458
Alignment:
| Q |
41 |
aactcaccatggttcaca---ttgagaaggattgcaaatgtttttgcaacatttcccaaaacatccttcattgtatttgttattgaaaatcctagttttt |
137 |
Q |
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||||||||||||| |||| | ||||||||||| || |||||| |||||||| |||||| ||||||||||||| ||| || |||| | || ||| |
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| T |
25057252 |
aactcaccatggtccacacgttggagaaggattgttcatatttttgtcacatttccaaaaacacccttcattgtatt-gttgttccaaattccagctttc |
25057350 |
T |
|
| Q |
138 |
attagtaaccaattgtatataataatcagggcccacaatataaaacttaacaggtaactttggctttcaatcagaaccactaattagtttataataaatc |
237 |
Q |
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|||| ||||||| | ||||||||| |||| ||||||||| |||||||| |||||||||| |||||||||| ||||||| |||| |||||||||||| |
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| T |
25057351 |
attaataaccaaatacatataataaacaggacccacaatagaaaacttagcaggtaacttcaactttcaatcataaccactcattaaattataataaatc |
25057450 |
T |
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| Q |
238 |
ctatggct |
245 |
Q |
| |
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|||||||| |
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| T |
25057451 |
ctatggct |
25057458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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