View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10607_low_6 (Length: 253)
Name: NF10607_low_6
Description: NF10607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10607_low_6 |
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| [»] chr2 (8 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 143; Significance: 3e-75; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 11 - 253
Target Start/End: Complemental strand, 5500897 - 5500655
Alignment:
| Q |
11 |
agagatgaagcatgtaggttaagtactgtgaggctgctcatgttgaacagccaagaaggtatggtggaattaaaaagatttcctgagagataaagcgtag |
110 |
Q |
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| T |
5500897 |
agagatgaactatatagattaatttctgtaaggccgctcatgttgaacagccaagaaggtatagtggaattaaaaagatttccagtgagataaagcctgg |
5500798 |
T |
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| Q |
111 |
agagagatgtaatatttagaaatggtgaggctggagggagagaagcaagactgcaagaggacaaatgcaactctaatagagatggcatcttattcacagc |
210 |
Q |
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| T |
5500797 |
aaagagatgtaatatttagaaatggtgaagctggagggagtgaagcaagactgcaaaaggacaaatgcaactctaatagagatgacatcttattcacagc |
5500698 |
T |
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| Q |
211 |
ttgaaacaactcatggggtgagttggtaatgtcgacaaaatcc |
253 |
Q |
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| T |
5500697 |
tcgaaacaactcacgggacgagttggtgatgttgataaaatcc |
5500655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 36 - 251
Target Start/End: Complemental strand, 5490055 - 5489840
Alignment:
| Q |
36 |
ctgtgaggctgctcatgttgaacagccaagaaggtatggtggaattaaaaagatttcctgagagataaagcgtagagagagatgtaatatttagaaatgg |
135 |
Q |
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| T |
5490055 |
ctgtgagggtgctcatgttgaacatccaagaaggtattgaggaattaaaatgatttccagagagatcaagcacagaaagtgatgtagaatttaaaaatgg |
5489956 |
T |
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| Q |
136 |
tgaggctggagggagagaagcaagactgcaagaggacaaatgcaactctaatagagatggcatcttattcacagcttgaaacaactcatggggtgagttg |
235 |
Q |
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| T |
5489955 |
tgacgatggagggagagcgccaagattgcaagaagccaaatgcaattctaacaaatatgacatcttattcacaacttggaacaactcatgtggcgagttg |
5489856 |
T |
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| Q |
236 |
gtaatgtcgacaaaat |
251 |
Q |
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| T |
5489855 |
gtaatgtttacaaaat |
5489840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 123 - 253
Target Start/End: Complemental strand, 5484783 - 5484653
Alignment:
| Q |
123 |
tatttagaaatggtgaggctggagggagagaagcaagactgcaagaggacaaatgcaactctaatagagatggcatcttattcacagcttgaaacaactc |
222 |
Q |
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| T |
5484783 |
tatttaaaaatggtgaagacggtggaagagaagcaagattgcaagaggacaaatgcaactctaatagagatgacatcttattcacagctcgaaacaactc |
5484684 |
T |
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| Q |
223 |
atggggtgagttggtaatgtcgacaaaatcc |
253 |
Q |
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| T |
5484683 |
atggggcgagttggtgatgttgacaaaatcc |
5484653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 50 - 240
Target Start/End: Complemental strand, 5495823 - 5495633
Alignment:
| Q |
50 |
atgttgaacagccaagaaggtatggtggaattaaaaagatttcctgagagataaagcgtagagagagatgtaatatttagaaatggtgaggctggaggga |
149 |
Q |
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| T |
5495823 |
atgttaaacaaccaagaaggtatagatgaattaaaaggatttccagagagatcaagcacagaaagtgatgtaatatttaaaaatggtgaagatggtggga |
5495724 |
T |
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| Q |
150 |
gagaagcaagactgcaagaggacaaatgcaactctaatagagatggcatcttattcacagcttgaaacaactcatggggtgagttggtaat |
240 |
Q |
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| T |
5495723 |
gaaaagcaagattgcaatacattaaatgcaactctaatagagatggtatcttattcatagtttgaaaccactcatggggcgaggtggtaat |
5495633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 116 - 233
Target Start/End: Complemental strand, 5467218 - 5467101
Alignment:
| Q |
116 |
gatgtaatatttagaaatggtgaggctggagggagagaagcaagactgcaagaggacaaatgcaactctaatagagatggcatcttattcacagcttgaa |
215 |
Q |
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|||| |||||||| ||| ||||| | ||||||||| | ||||||| ||||| ||||||||||||||||||| ||||||||||||||||| |||||| ||| |
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| T |
5467218 |
gatgaaatatttaaaaagggtgaagatggagggagtgcagcaagattgcaaaaggacaaatgcaactctaacagagatggcatcttattaacagctcgaa |
5467119 |
T |
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| Q |
216 |
acaactcatggggtgagt |
233 |
Q |
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| T |
5467118 |
acaactcacggggtgagt |
5467101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 47 - 220
Target Start/End: Complemental strand, 5476922 - 5476749
Alignment:
| Q |
47 |
ctcatgttgaacagccaagaaggtatggtggaattaaaaagatttcctgagagataaagcgtagagagagatgtaatatttagaaatggtgaggctggag |
146 |
Q |
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||||||||||||||||||||||| || | || ||| ||| ||||||| ||||||| |||| ||| || | ||||||||||| |||||| || | ||||| |
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| T |
5476922 |
ctcatgttgaacagccaagaaggcattgaggtatttaaaggatttccagagagatcaagcacagaaagtggtgtaatatttaaaaatggcgaagttggag |
5476823 |
T |
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| Q |
147 |
ggagagaagcaagactgcaagaggacaaatgcaactctaatagagatggcatcttattcacagcttgaaacaac |
220 |
Q |
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| T |
5476822 |
ggagagaagaaattccgcaagaagccaaatgcaactctaacagagaagacatctttttcacagctcgaaacaac |
5476749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 39 - 235
Target Start/End: Complemental strand, 5481995 - 5481807
Alignment:
| Q |
39 |
tgaggctgctcatgttgaacagccaagaaggtatggtggaattaaaaagatttcctgagagataaagcgtagagagagatgtaatatttagaaatggtga |
138 |
Q |
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|||| |||||||||||||| | |||||||||||| | ||||| |||| ||||||||||||||| ||| ||| || ||||| ||||||| ||| ||||| |
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| T |
5481995 |
tgagactgctcatgttgaatatccaagaaggtattgaggaatgaaaaggatttcctgagagatcaaggacagaaagtgatgtcatatttaaaaacggtga |
5481896 |
T |
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| Q |
139 |
ggctggagggagagaagcaagactgcaagaggacaaatgcaactctaatagagatggcatcttattcacagcttgaaacaactcatggggtgagttg |
235 |
Q |
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| T |
5481895 |
agatgaagggag---agcaa-----caagaggacaagtgcaactctaacatagaagacatcttattcacagatcgaaacaactcgtggggcgagttg |
5481807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 101
Target Start/End: Complemental strand, 5485084 - 5485030
Alignment:
| Q |
47 |
ctcatgttgaacagccaagaaggtatggtggaattaaaaagatttcctgagagat |
101 |
Q |
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||||||||||||| ||||||||||| | |||||||||| ||||||| ||||||| |
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| T |
5485084 |
ctcatgttgaacatccaagaaggtaatgaggaattaaaaggatttccagagagat |
5485030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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