View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10608_high_5 (Length: 271)
Name: NF10608_high_5
Description: NF10608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10608_high_5 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 31 - 271
Target Start/End: Complemental strand, 38032789 - 38032546
Alignment:
| Q |
31 |
acaagaagcaagttattatacgtcaaaccaacacggttttcatctaaattttcttcattcttattttctttatctttgtcctctcattcacctttttaaa |
130 |
Q |
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| T |
38032789 |
acaagaagcaagttattttatgtcacaccaacacggtcttcatctaaattttcttcattcttattttctttatctttgtcctctcattcccctttttaaa |
38032690 |
T |
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| Q |
131 |
aaataaacaaacgatcctgtga----atatgcccattctcaacactgatgtaggactcaacaactttataccaattttagaaattgtttttgctttggcc |
226 |
Q |
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| T |
38032689 |
aaacaaacaaacgatcttgtgaatatatatgcccattttcaacactgatgtaggactcaac-actttataccaattttagaaattgcttttgctttggcc |
38032591 |
T |
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| Q |
227 |
tctgttacttgaataatagttcttgtttctccccttatccagtaa |
271 |
Q |
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| T |
38032590 |
tctgttacttgaataatagttcttgtttctccccttatccagtaa |
38032546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 38025920 - 38025746
Alignment:
| Q |
1 |
tcaacaatattaacaagattttgctcgtcgacaagaagcaagttattatacgtcaaaccaacacggttttcatctaaattttcttcattcttattttctt |
100 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
38025920 |
tcaacaatattaacaagattttgctcgtcaacaagaagcaagttattatacgtcaaaccaacacggtcttcatctaaattttcttcattcttattttctt |
38025821 |
T |
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| Q |
101 |
tatctttgtcctctcattcacctttttaaaaaataaacaaacgatcctgtgaatatgcccattctcaacactgat |
175 |
Q |
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| T |
38025820 |
tatctttgtcctctcattcacctttttaaaaaataaacaaacgatcttgtgaatatgcccattttcagcactgat |
38025746 |
T |
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