View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10608_high_8 (Length: 251)
Name: NF10608_high_8
Description: NF10608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10608_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 53424862 - 53425107
Alignment:
| Q |
1 |
ttgaaagaggggtgaaatttatggcttgacccttaacaataacaattatcaaacatgagaaatatatcattgnnnnnnnnnnnnnnnnnnnnnnnnnttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
53424862 |
ttgaaagaggggtgaaatttatggcttgacccttaacaataacaattatcaaacatgagaaatatatcattgaaaattaaaaaaattaaaaaataaattg |
53424961 |
T |
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| Q |
101 |
atataccgcagagcgctatagattgtaccttgataactttgttactacccaaaacaatattggactgaagatcacgatcgatagtggtggctgcaacagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53424962 |
atataccgcagagcgctatagattgtaccttgataactttgttactacccaaaacaatattggactgaagatcacgatcgatagtggtggctgcaacagt |
53425061 |
T |
|
| Q |
201 |
caacatccaaggagcatcattaataactgtatttctctctgctcct |
246 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
53425062 |
caacatccaaggagcatcattaataactgtatttctctctgatcct |
53425107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 124 - 223
Target Start/End: Complemental strand, 48372558 - 48372459
Alignment:
| Q |
124 |
tgtaccttgataactttgttactacccaaaacaatattggactgaagatcacgatcgatagtggtggctgcaacagtcaacatccaaggagcatcattaa |
223 |
Q |
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| T |
48372558 |
tgtaccttgacaactttgttattacccaagacaacattggactgaaagtcacggtcaatagtggtggcagcaaccgttaatatccaaggtgcatcattaa |
48372459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 124 - 231
Target Start/End: Original strand, 26097502 - 26097609
Alignment:
| Q |
124 |
tgtaccttgataactttgttactacccaaaacaatattggactgaagatcacgatcgatagtggtggctgcaacagtcaacatccaaggagcatcattaa |
223 |
Q |
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| T |
26097502 |
tgtaccttgacaactttgttattacccaagacaacattggactgaaagtcacgatcaatggtagtggcagcaaccgttagtatccaaggagcgtcattaa |
26097601 |
T |
|
| Q |
224 |
taactgta |
231 |
Q |
| |
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||||||| |
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| T |
26097602 |
caactgta |
26097609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 112 - 231
Target Start/End: Original strand, 53308963 - 53309082
Alignment:
| Q |
112 |
agcgctatagattgtaccttgataactttgttactacccaaaacaatattggactgaagatcacgatcgatagtggtggctgcaacagtcaacatccaag |
211 |
Q |
| |
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|||| |||| ||||||||| ||||||||| |||||| ||||||| |||||||| | ||||| |||||| || |||||| ||||||| || ||||||| |
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| T |
53308963 |
agcgttataaattgtacctcaataactttgccactacctaaaacaacgttggactgcatatcacaatcgatggtagtggctacaacagttaatatccaag |
53309062 |
T |
|
| Q |
212 |
gagcatcattaataactgta |
231 |
Q |
| |
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|||| ||||||| ||||||| |
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| T |
53309063 |
gagcgtcattaacaactgta |
53309082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 122 - 239
Target Start/End: Original strand, 53432124 - 53432241
Alignment:
| Q |
122 |
attgtaccttgataactttgttactacccaaaacaatattggactgaagatcacgatcgatagtggtggctgcaacagtcaacatccaaggagcatcatt |
221 |
Q |
| |
|
|||||||||||||||||| ||| ||||||| |||| |||||||||| ||||| || ||||| ||||| |||| || || ||||||||||||||||| |
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| T |
53432124 |
attgtaccttgataacttctttattacccaagacaacgttggactgaaattcacggtcaatagttgtggcaccaacggttaatatccaaggagcatcatt |
53432223 |
T |
|
| Q |
222 |
aataactgtatttctctc |
239 |
Q |
| |
|
| ||| |||| ||||||| |
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| T |
53432224 |
agtaagtgtacttctctc |
53432241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 117 - 231
Target Start/End: Original strand, 53320744 - 53320858
Alignment:
| Q |
117 |
tatagattgtaccttgataactttgttactacccaaaacaatattggactgaagatcacgatcgatagtggtggctgcaacagtcaacatccaaggagca |
216 |
Q |
| |
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||||| |||||||||||| |||||| | ||||||| |||| ||| ||||| |||||||| || || || |||||| |||| || || ||||| |||||| |
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| T |
53320744 |
tatagtttgtaccttgatcactttgccattacccaagacaacattagactggagatcacggtcaattgttgtggctccaacggttaatatccagggagca |
53320843 |
T |
|
| Q |
217 |
tcattaataactgta |
231 |
Q |
| |
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|||||| ||||||| |
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| T |
53320844 |
tcattagaaactgta |
53320858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 48373679 - 48373647
Alignment:
| Q |
1 |
ttgaaagaggggtgaaatttatggcttgaccct |
33 |
Q |
| |
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|||||||||||| |||||||||||||||||||| |
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| T |
48373679 |
ttgaaagaggggagaaatttatggcttgaccct |
48373647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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