View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10608_low_17 (Length: 239)
Name: NF10608_low_17
Description: NF10608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10608_low_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 42411861 - 42412085
Alignment:
| Q |
1 |
ttcaaaattaaagagggaacttcaatagaaattgcacaggttaaatccttaacgcaatcttggggttaaacatttataaagctttctcatcaatcccttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42411861 |
ttcaaaattaaagagggaacttcaatagaaattgcacaggttaaatccttaacgcaatcttggggttaaacatttataaagctttctcatcaatcccttt |
42411960 |
T |
|
| Q |
101 |
cttcttcaaatggtagttaatcttttattttgtttcagtataatcccccatttgctcttccatttcaacgccgtaatgagattgcattggaggtggactg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
42411961 |
cttcttcaaatggtagttaatcttttattttgtttcagtataatcccccatttgctcttccatttcaacgccgtaatgagattgcattggaggtggagtg |
42412060 |
T |
|
| Q |
201 |
gaaaaacaagtaggaacaatatttg |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
42412061 |
gaaaaacaagtaggaacaatatttg |
42412085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University