View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10608_low_2 (Length: 439)
Name: NF10608_low_2
Description: NF10608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10608_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 8 - 434
Target Start/End: Complemental strand, 31819964 - 31819538
Alignment:
| Q |
8 |
gggtaacatttttactaaatttgaatattctaaatgtcttgagagctgattcaatatgctccggattgtgaggctataactttgtgactacttgcagtga |
107 |
Q |
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| T |
31819964 |
gggtaacatttttactaaatttgaatattctaaatgtcttgagagctgattcaacatgctccggattgtgaggccataactttgtgactacatgcagtca |
31819865 |
T |
|
| Q |
108 |
cacatattttggttgtcttattaaaatccaactttatttcnnnnnnngatattttagattttaagaaaattattcgatgcatatttagatttacggtgag |
207 |
Q |
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| T |
31819864 |
cacatattttggttgtcttattaaaatccaacttgatttcttttttcgatattttagattttaagaaaattattcgatgcatatttagatttacggtgag |
31819765 |
T |
|
| Q |
208 |
tttgatagagttatactgagtcatcatgaattatgatttacatagattacattatgaagtttcaacgaaaccatgatatatacattgtaattttagcaaa |
307 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31819764 |
tttgatagagttatagtgagtcatcatgaattatgatttacatagattacatcatgaagtttcaacgaaaccatgatatatacattgtaattttagcaaa |
31819665 |
T |
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| Q |
308 |
cccgctataaccctaattctaagcatgcactaaaaagtatatatactaggatgtttaacagcatgtatgattcttaataagcattttcttttagacatat |
407 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31819664 |
cccgctataaccctaattttaagcatgcactaaaaagtatatatactaggatgtttaacagcatgtatgattcttaataagcattttcttttagacatat |
31819565 |
T |
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| Q |
408 |
tagagtttaagaagagttcatctcact |
434 |
Q |
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||||||||||||||||||||||||||| |
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| T |
31819564 |
tagagtttaagaagagttcatctcact |
31819538 |
T |
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