View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10608_low_20 (Length: 237)
Name: NF10608_low_20
Description: NF10608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10608_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 153; Significance: 3e-81; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 17 - 223
Target Start/End: Complemental strand, 835120 - 834913
Alignment:
| Q |
17 |
agtatgaatcgaacttggtaccacggggtttacattgaatcccagtattggcatatatgcacattatnnnnnnn--tcaaaacacatctaattccacagt |
114 |
Q |
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| T |
835120 |
agtatgaatcgaacttggtaccacggggtttacattgaatcccagtattggcatatatgcacattataaaaagaaatcaaaacatatctaattccacagt |
835021 |
T |
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| Q |
115 |
ctgtatcctgaaaaagtgtgctaattttggcattagttcttagtttagcatgataacaacaatatacaaataagtgcactaagaaggtgcaacaaacatg |
214 |
Q |
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| T |
835020 |
ttgtatc-tgaaaaagtgtgctaattttggcattagttcttagtttagcatgataacaacaatatacaaaaaggtgcactaagaaggtgcaacaaacatg |
834922 |
T |
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| Q |
215 |
gttacaaat |
223 |
Q |
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||||||||| |
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| T |
834921 |
gttacaaat |
834913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 91 - 180
Target Start/End: Complemental strand, 813338 - 813248
Alignment:
| Q |
91 |
tcaaaacacatctaattccacagtctgtatcctgaaaaa-gtgtgctaattttggcattagttcttagtttagcatgataacaacaatata |
180 |
Q |
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|||||||||||||||||||||| | |||||||| ||||| || |||||||||| | ||||||||| ||||||||||||||||||||||||| |
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| T |
813338 |
tcaaaacacatctaattccacattttgtatcctaaaaaaagtatgctaattttagtattagttctgagtttagcatgataacaacaatata |
813248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 813403 - 813350
Alignment:
| Q |
17 |
agtatgaatcgaacttggtaccacggggtttacattgaatcccagtattggcata |
71 |
Q |
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| T |
813403 |
agtatgaatcgaacttggcaccac-gagtttacattgaatcccaatcttggcata |
813350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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