View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10608_low_23 (Length: 232)

Name: NF10608_low_23
Description: NF10608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10608_low_23
NF10608_low_23
[»] chr5 (7 HSPs)
chr5 (104-209)||(14148612-14148717)
chr5 (104-209)||(18014716-18014821)
chr5 (104-209)||(39058371-39058476)
chr5 (1-32)||(14148787-14148818)
chr5 (1-32)||(18014613-18014644)
chr5 (1-32)||(39058268-39058299)
chr5 (118-183)||(24043053-24043120)
[»] chr4 (2 HSPs)
chr4 (104-209)||(24021291-24021396)
chr4 (1-32)||(24021466-24021497)
[»] chr8 (4 HSPs)
chr8 (104-209)||(3469492-3469597)
chr8 (104-209)||(42906199-42906304)
chr8 (1-32)||(3469391-3469422)
chr8 (1-32)||(42906699-42906730)
[»] chr3 (2 HSPs)
chr3 (104-209)||(30991335-30991440)
chr3 (118-209)||(93104-93195)
[»] chr1 (5 HSPs)
chr1 (104-209)||(46435882-46435987)
chr1 (104-209)||(35760738-35760843)
chr1 (107-203)||(29119718-29119817)
chr1 (1-32)||(29119612-29119643)
chr1 (1-32)||(46435779-46435810)
[»] chr6 (2 HSPs)
chr6 (116-206)||(3808195-3808285)
chr6 (107-139)||(9620293-9620325)


Alignment Details
Target: chr5 (Bit Score: 106; Significance: 3e-53; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 104 - 209
Target Start/End: Complemental strand, 14148717 - 14148612
Alignment:
Q  104 tgctggtgctggaaatctatgatgtagtattatataggatggatatgaaaattttaaaattagtgggggcacttgcttgcacaagagccaacatggctcc 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14148717 tgctggtgctggaaatctatgatgtagtattatataggatggatatgaaaattttaaaattagtgggggcacttgcttgcacaagagccaacatggctcc 14148618  T
Q  204 gcccct 209  Q
    ||||||    
T  14148617 gcccct 14148612  T

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Target: chr5; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 104 - 209
Target Start/End: Original strand, 18014716 - 18014821
Alignment:
Q  104 tgctggtgctggaaatctatgatgtagtattatataggatggatatgaaaattttaaaattagtgggggcacttgcttgcacaagagccaacatggctcc 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  18014716 tgctggtgctggaaatctatgatgtagtattatataggatggatatgaaaatttcaaaattagtggaggcacttgcttgcacaagagccaacatggctcc 18014815  T
Q  204 gcccct 209  Q
    ||||||    
T  18014816 gcccct 18014821  T

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Target: chr5; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 104 - 209
Target Start/End: Original strand, 39058371 - 39058476
Alignment:
Q  104 tgctggtgctggaaatctatgatgtagtattatataggatggatatgaaaattttaaaattagtgggggcacttgcttgcacaagagccaacatggctcc 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||| |||||    
T  39058371 tgctggtgctggaaatctatgatgtagtattatataggatggatataaaaatttcaaaattaatgggggcacttgcttgcacaagagccaacatcgctcc 39058470  T
Q  204 gcccct 209  Q
    ||||||    
T  39058471 gcccct 39058476  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 14148818 - 14148787
Alignment:
Q  1 aaaagaaacaacacatagagaagaggtgcatg 32  Q
    ||||||||||||||||||||||||||||||||    
T  14148818 aaaagaaacaacacatagagaagaggtgcatg 14148787  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 18014613 - 18014644
Alignment:
Q  1 aaaagaaacaacacatagagaagaggtgcatg 32  Q
    ||||||||||||||||||||||||||||||||    
T  18014613 aaaagaaacaacacatagagaagaggtgcatg 18014644  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 39058268 - 39058299
Alignment:
Q  1 aaaagaaacaacacatagagaagaggtgcatg 32  Q
    ||||||||||||||||||||||||||||||||    
T  39058268 aaaagaaacaacacatagagaagaggtgcatg 39058299  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 183
Target Start/End: Original strand, 24043053 - 24043120
Alignment:
Q  118 atctatgatgtagtattatataggatggatatgaaaattttaaaa--ttagtgggggcacttgcttgc 183  Q
    |||||||| |||||||||| ||||||| |||  ||||| | ||||  |||||||||||||||||||||    
T  24043053 atctatgaagtagtattatgtaggatgaatactaaaatctcaaaaaattagtgggggcacttgcttgc 24043120  T

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Target: chr4 (Bit Score: 106; Significance: 3e-53; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 104 - 209
Target Start/End: Complemental strand, 24021396 - 24021291
Alignment:
Q  104 tgctggtgctggaaatctatgatgtagtattatataggatggatatgaaaattttaaaattagtgggggcacttgcttgcacaagagccaacatggctcc 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24021396 tgctggtgctggaaatctatgatgtagtattatataggatggatatgaaaattttaaaattagtgggggcacttgcttgcacaagagccaacatggctcc 24021297  T
Q  204 gcccct 209  Q
    ||||||    
T  24021296 gcccct 24021291  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 24021497 - 24021466
Alignment:
Q  1 aaaagaaacaacacatagagaagaggtgcatg 32  Q
    ||||||||||||||||||||||||||||||||    
T  24021497 aaaagaaacaacacatagagaagaggtgcatg 24021466  T

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Target: chr8 (Bit Score: 102; Significance: 8e-51; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 104 - 209
Target Start/End: Original strand, 3469492 - 3469597
Alignment:
Q  104 tgctggtgctggaaatctatgatgtagtattatataggatggatatgaaaattttaaaattagtgggggcacttgcttgcacaagagccaacatggctcc 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  3469492 tgctggtgctggaaatctatgatgtagtattatataggatggatatgaaaatttcaaaattagtgggggcacttgcttgcacaagagccaacatggctcc 3469591  T
Q  204 gcccct 209  Q
    ||||||    
T  3469592 gcccct 3469597  T

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Target: chr8; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 104 - 209
Target Start/End: Complemental strand, 42906304 - 42906199
Alignment:
Q  104 tgctggtgctggaaatctatgatgtagtattatataggatggatatgaaaattttaaaattagtgggggcacttgcttgcacaagagccaacatggctcc 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  42906304 tgctggtgctggaaatctatgatgtagtattatataggatggatatgaaaatttaaaaattagtgggggcacttgcttgcacaagagccaacatggctcc 42906205  T
Q  204 gcccct 209  Q
    ||||||    
T  42906204 gcccct 42906199  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 3469391 - 3469422
Alignment:
Q  1 aaaagaaacaacacatagagaagaggtgcatg 32  Q
    ||||||||||||||||||||||||||||||||    
T  3469391 aaaagaaacaacacatagagaagaggtgcatg 3469422  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 42906730 - 42906699
Alignment:
Q  1 aaaagaaacaacacatagagaagaggtgcatg 32  Q
    ||||||||||||||||||||||||||||||||    
T  42906730 aaaagaaacaacacatagagaagaggtgcatg 42906699  T

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Target: chr3 (Bit Score: 102; Significance: 8e-51; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 104 - 209
Target Start/End: Complemental strand, 30991440 - 30991335
Alignment:
Q  104 tgctggtgctggaaatctatgatgtagtattatataggatggatatgaaaattttaaaattagtgggggcacttgcttgcacaagagccaacatggctcc 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  30991440 tgctggtgctggaaatctatgatgtagtattatataggatggatatgaaaatttcaaaattagtgggggcacttgcttgcacaagagccaacatggctcc 30991341  T
Q  204 gcccct 209  Q
    ||||||    
T  30991340 gcccct 30991335  T

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Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 118 - 209
Target Start/End: Complemental strand, 93195 - 93104
Alignment:
Q  118 atctatgatgtagtattatataggatggatatgaaaattttaaaattagtgggggcacttgcttgcacaagagccaacatggctccgcccct 209  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  93195 atctatgatgtagtattatataggatggatatgaaaatttcaaaattagtgggggcacttgcttgcacaagagccaacatggctccgcccct 93104  T

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Target: chr1 (Bit Score: 102; Significance: 8e-51; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 104 - 209
Target Start/End: Original strand, 46435882 - 46435987
Alignment:
Q  104 tgctggtgctggaaatctatgatgtagtattatataggatggatatgaaaattttaaaattagtgggggcacttgcttgcacaagagccaacatggctcc 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  46435882 tgctggtgctggaaatctatgatgtagtattatataggatggatatgaaaatttcaaaattagtgggggcacttgcttgcacaagagccaacatggctcc 46435981  T
Q  204 gcccct 209  Q
    ||||||    
T  46435982 gcccct 46435987  T

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Target: chr1; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 104 - 209
Target Start/End: Original strand, 35760738 - 35760843
Alignment:
Q  104 tgctggtgctggaaatctatgatgtagtattatataggatggatatgaaaattttaaaattagtgggggcacttgcttgcacaagagccaacatggctcc 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  35760738 tgctggtgctggaaatctatgatgtagtattatataggatggatatgaaaatttcaaaattagtgggggcacttgcttgtacaagagccaacatggctcc 35760837  T
Q  204 gcccct 209  Q
    ||||||    
T  35760838 gcccct 35760843  T

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Target: chr1; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 107 - 203
Target Start/End: Original strand, 29119718 - 29119817
Alignment:
Q  107 tggtgctggaaatctatgatgtagtatt---atataggatggatatgaaaattttaaaattagtgggggcacttgcttgcacaagagccaacatggctcc 203  Q
    |||| |||||||||||||||||||||||   ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  29119718 tggttctggaaatctatgatgtagtattattatataggatggatatgaaaatttcaaaattagtgggggcacttgcttgcacaaaagccaacatggctcc 29119817  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 29119612 - 29119643
Alignment:
Q  1 aaaagaaacaacacatagagaagaggtgcatg 32  Q
    ||||||||||||||||||||||||||||||||    
T  29119612 aaaagaaacaacacatagagaagaggtgcatg 29119643  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 46435779 - 46435810
Alignment:
Q  1 aaaagaaacaacacatagagaagaggtgcatg 32  Q
    ||||||||||||||||||||||||||||||||    
T  46435779 aaaagaaacaacacatagagaagaggtgcatg 46435810  T

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Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 116 - 206
Target Start/End: Original strand, 3808195 - 3808285
Alignment:
Q  116 aaatctatgatgtagtattatataggatggatatgaaaattttaaaattagtgggggcacttgcttgcacaagagccaacatggctccgcc 206  Q
    |||||| |||| |||||||||||||||||||||||||||||| |||||| |||| ||||| ||||||||||||||| ||||||||||||||    
T  3808195 aaatctttgatatagtattatataggatggatatgaaaatttcaaaatttgtggtggcacatgcttgcacaagagcgaacatggctccgcc 3808285  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 139
Target Start/End: Complemental strand, 9620325 - 9620293
Alignment:
Q  107 tggtgctggaaatctatgatgtagtattatata 139  Q
    |||||||||| ||||||||||||||||||||||    
T  9620325 tggtgctggagatctatgatgtagtattatata 9620293  T

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