View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10608_low_27 (Length: 227)
Name: NF10608_low_27
Description: NF10608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10608_low_27 |
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| [»] chr7 (2 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 40471566 - 40471340
Alignment:
| Q |
1 |
ggaggaccaaaaagcattaccatccacaaataatgctgatagaccttcgtatgatggatataactggagaaaatatggacagaagcaagtaaaaggaagc |
100 |
Q |
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| T |
40471566 |
ggaggaccaaaaagcattaccatccacaaataatgctgatagaccttcgtatgatggatataactggagaaaatatggacagaagcaagtaaaaggaagc |
40471467 |
T |
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| Q |
101 |
gagtatcctcgaagttattacaagtgcacatatcctaattgtccagttaaaaagaaagttgaaagatcattagatggtgagattgcagaaattgtttata |
200 |
Q |
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| T |
40471466 |
gagtatcctcgaagttattacaagtgcacatatcctaattgtccagttaaaaagaaagttgaaagatcattagatggtgagattgcagaaattgtttata |
40471367 |
T |
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| Q |
201 |
aaggtgaacacaaccatggaaagccac |
227 |
Q |
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| T |
40471366 |
aaggtgaacacaaccatggaaagccac |
40471340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 129
Target Start/End: Complemental strand, 26332607 - 26332543
Alignment:
| Q |
65 |
tggagaaaatatggacagaagcaagtaaaaggaagcgagtatcctcgaagttattacaagtgcac |
129 |
Q |
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| T |
26332607 |
tggagaaaatatggacagaaacaagtgaaaggaagcgaaaatccgcgtagttattacaagtgcac |
26332543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 16863606 - 16863818
Alignment:
| Q |
1 |
ggaggaccaaaaagcattaccatccacaaataatgctgatagaccttcgtatgatggatataactggagaaaatatggacagaagcaagtaaaaggaagc |
100 |
Q |
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| T |
16863606 |
ggaggaccaaaaagcattaccatccacaaataatgttgatagaccttcgtatgatggatataactagagaaaatatggaaagaag--------------c |
16863691 |
T |
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| Q |
101 |
gagtatcctcgaagttattacaagtgcacatatcctaattgtccagttaaaaagaaagttgaaagatcattagatggtgagattgcagaaattgtttata |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16863692 |
gagtatcttcgaagttattacaagtgcacatatcctaattatccagttaaaaagaaagttgaaagatcattagatggtgagattgcagaaattgtttata |
16863791 |
T |
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| Q |
201 |
aaggtgaacacaaccatggaaagccac |
227 |
Q |
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| T |
16863792 |
aaggtgaacacaaccatggaaagccac |
16863818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 53 - 159
Target Start/End: Original strand, 2056300 - 2056406
Alignment:
| Q |
53 |
gatggatataactggagaaaatatggacagaagcaagtaaaaggaagcgagtatcctcgaagttattacaagtgcacatatcctaattgtccagttaaaa |
152 |
Q |
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| T |
2056300 |
gatggatataattggagaaaatatggccaaaagcaagttaagggtagcgagtaccctcgaagttactacaagtgtactcattcaaattgtccagttaaaa |
2056399 |
T |
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| Q |
153 |
agaaagt |
159 |
Q |
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| T |
2056400 |
agaaagt |
2056406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 51 - 145
Target Start/End: Complemental strand, 26967130 - 26967036
Alignment:
| Q |
51 |
atgatggatataactggagaaaatatggacagaagcaagtaaaaggaagcgagtatcctcgaagttattacaagtgcacatatcctaattgtcca |
145 |
Q |
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| T |
26967130 |
atgatggatacaattggagaaaatatggacaaaaacaagtgaaaggaagtgaaaatccaagaagttattataaatgcacttaccctaattgtcca |
26967036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 51 - 144
Target Start/End: Complemental strand, 18876394 - 18876301
Alignment:
| Q |
51 |
atgatggatataactggagaaaatatggacagaagcaagtaaaaggaagcgagtatcctcgaagttattacaagtgcacatatcctaattgtcc |
144 |
Q |
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||||||| || |||||||| ||||| |||||||| || || ||||| ||||||| |||||||||||||||||||||||| ||||||| ||||| |
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| T |
18876394 |
atgatggctacaactggaggaaatacggacagaaacaggtgaaaggtagcgagtttcctcgaagttattacaagtgcacgcatcctaactgtcc |
18876301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 51 - 169
Target Start/End: Complemental strand, 31615430 - 31615312
Alignment:
| Q |
51 |
atgatggatataactggagaaaatatggacagaagcaagtaaaaggaagcgagtatcctcgaagttattacaagtgcacatatcctaattgtccagttaa |
150 |
Q |
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| T |
31615430 |
atgatggatacaattggcgaaaatatggacaaaagcaagttaagggaagtgaaaatccgagaagttactacaaatgcacataccctaactgtcctacaaa |
31615331 |
T |
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| Q |
151 |
aaagaaagttgaaagatca |
169 |
Q |
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| T |
31615330 |
gaagaaagttgagagatca |
31615312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 129
Target Start/End: Original strand, 3669194 - 3669270
Alignment:
| Q |
53 |
gatggatataactggagaaaatatggacagaagcaagtaaaaggaagcgagtatcctcgaagttattacaagtgcac |
129 |
Q |
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|||||||| || ||||||||||||||| |||| ||||| |||||||| || |||| ||||||||||||||||||| |
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| T |
3669194 |
gatggatacaagtggagaaaatatggagagaaacaagtgaaaggaagtgaaaatccaagaagttattacaagtgcac |
3669270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 123
Target Start/End: Complemental strand, 32110321 - 32110260
Alignment:
| Q |
62 |
aactggagaaaatatggacagaagcaagtaaaaggaagcgagtatcctcgaagttattacaa |
123 |
Q |
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| T |
32110321 |
aactggaggaagtatggacaaaaacaagtgaaaggttgcgagtttcctcgaagttattacaa |
32110260 |
T |
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