View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10608_low_28 (Length: 227)
Name: NF10608_low_28
Description: NF10608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10608_low_28 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 6 - 227
Target Start/End: Complemental strand, 50531019 - 50530798
Alignment:
| Q |
6 |
acgatgcagtatacatttgctttaagagtgagagtccattaaacgtacctgatgtcacaatttgtgacttctatatattcacatcaccccacaaatcatg |
105 |
Q |
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| T |
50531019 |
acgatgcaatttacgtttgctttaaaggtgagagtccactaaacatacctgatgtcacaatttgtaacttctatatattcacatcaccccacaaatcatg |
50530920 |
T |
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| Q |
106 |
tagtatatatttgctttagcggtgagagtccattaaatgtatttttaatctgatgtcataatttatgacttctatatttttaacattaaaatgatatcga |
205 |
Q |
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||||||| ||||||||||||||||||||||| |||| ||| |||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
50530919 |
tagtatacgtttgctttagcggtgagagtccactaaacttatatttagtctgatgtcatagtttatgacttctatatttttaacattaaaatgacatcga |
50530820 |
T |
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| Q |
206 |
aatgttagaatttacgattcaa |
227 |
Q |
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|||||||||||||||||||||| |
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| T |
50530819 |
aatgttagaatttacgattcaa |
50530798 |
T |
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