View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10608_low_4 (Length: 375)
Name: NF10608_low_4
Description: NF10608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10608_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 6 - 373
Target Start/End: Complemental strand, 116978 - 116606
Alignment:
| Q |
6 |
aagttcatca-aagatagaatgttataagcctttgacataaggctggccaattatttgattatctgcttaagtataagcaaatccggatattagatagtc |
104 |
Q |
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| T |
116978 |
aagttcatcagaagattgaatgttataagcctttgacataaggctggccaattatttgattatctgcttaagtataagcaaatccggatattagatagtc |
116879 |
T |
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| Q |
105 |
ataagattcctcaagctgaggacatcataggcaactccaacaaccactcaacatttaattgcattgtcatttgaaaatctattaaaaaataatgagggta |
204 |
Q |
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| T |
116878 |
ataagattcctcaagctgaggacatcataggcaactccaacaaccactcaacatttaattgcattgtcatttgaaaatctattaaaaaataatgagggta |
116779 |
T |
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| Q |
205 |
tgtttaagctagcaaataagagaatgcttgagatgggcatcgaaatcgattctttcccagtcacgaaaaatagccatggtatcattctctgagctcacaa |
304 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
116778 |
tgtttaagctagcaaataagagaatgcttgagatggacatcgaaatcgattctttcccagtcacgaaaaatggccatggtatcattctctgagcccacaa |
116679 |
T |
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| Q |
305 |
gt----gtagaataactcggaaatggaagaaattaatcaagcaggatgggcaatgtaaattcatctcagtcga |
373 |
Q |
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|| |||||| |||||||||| |||||||||||||||||||||||| ||||||||||| ||| |||||||| |
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| T |
116678 |
gtgtacgtagaacaactcggaaagggaagaaattaatcaagcaggatgagcaatgtaaatccatatcagtcga |
116606 |
T |
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