View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10608_low_6 (Length: 339)
Name: NF10608_low_6
Description: NF10608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10608_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 13)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 11 - 324
Target Start/End: Original strand, 6287202 - 6287515
Alignment:
| Q |
11 |
cataggtaggagttgagggaatagaattccgtttcgtctgttattcaaagcagcaacacaataaccatgacccaatttagatggagatactattgggaat |
110 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6287202 |
cataggtaggaggtgagggaatagaattccgtctcgtctgttattcaaagcagcaacacaataaccatgacccaatttagatggagatactattgggaat |
6287301 |
T |
|
| Q |
111 |
gcctctgcaagtcaatccttcctcactagaaggataaagcaaagtatatggcatcttcactggtccataacgattcctcagtgtctcatcgttgttcctt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6287302 |
gcctctgcaagtcaatccttcctcactagaaggataaagcaaagtatatggcatcttcactggtccataacgattcctcagtgtctcatcgttgttcctt |
6287401 |
T |
|
| Q |
211 |
tgagtgagttttttctcaatttcagccagcttctttccaaacctcttgaaagcctcttttggttgtgaatcagaagtccaattatcaccttcaattctct |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6287402 |
tgagtgagttttttctcaatttcagccagcttctttccaaacctcttgaaagcctcttttggttgtgaatcagaagtccaattatcaccttcaattctct |
6287501 |
T |
|
| Q |
311 |
gtccaaggtattgt |
324 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
6287502 |
gtccaaggtattgt |
6287515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 24 - 323
Target Start/End: Original strand, 6350753 - 6351052
Alignment:
| Q |
24 |
tgagggaatagaattccgtttcgtctgttattcaaagcagcaacacaataaccatgacccaatttagatggagatactattgggaatgcctctgcaagtc |
123 |
Q |
| |
|
||||||||| ||||||| | | ||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
6350753 |
tgagggaatggaattccttcacatctgttattcaaagcagcaacacaacaaccatgatccactttagatggagatactattaggaatgcctcggcaagtc |
6350852 |
T |
|
| Q |
124 |
aatccttcctcactagaaggataaagcaaagtatatggcatcttcactggtccataacgattcctcagtgtctcatcgttgttcctttgagtgagttttt |
223 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||||||||||||||||| || ||||| |||| ||||||||| |||||||||||||||||||| | |
|
|
| T |
6350853 |
aatccttcctcactagaaggataaagtagagtatatggcatcttcactggtccgtaccgatttctcaatgtctcatcattgttcctttgagtgagtttct |
6350952 |
T |
|
| Q |
224 |
tctcaatttcagccagcttctttccaaacctcttgaaagcctcttttggttgtgaatcagaagtccaattatcaccttcaattctctgtccaaggtattg |
323 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| || ||||||||||||||||| ||||||||||| |||||||||||||| | |||||||||||| |
|
|
| T |
6350953 |
gttcaatttcagccaacttctttccaaacctcttgaaggcttcttttggttgtgaatctgaagtccaattgtcaccttcaattctatctccaaggtattg |
6351052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 86 - 324
Target Start/End: Original strand, 6273026 - 6273264
Alignment:
| Q |
86 |
tttagatggagatactattgggaatgcctctgcaagtcaatccttcctcactagaaggataaagcaaagtatatggcatcttcactggtccataacgatt |
185 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
6273026 |
tttagatggagatactgttaggaatgcctctgcaagtcaatccttcctcactagaaggataaagcaaagtatacggcatcttcactggtccatatcgatt |
6273125 |
T |
|
| Q |
186 |
cctcagtgtctcatcgttgttcctttgagtgagttttttctcaatttcagccagcttctttccaaacctcttgaaagcctcttttggttgtgaatcagaa |
285 |
Q |
| |
|
||| || |||||||| |||||||||||||||||||||| ||||||||||||| ||| |||| || ||||||||||||||| |||||||||||||||| |
|
|
| T |
6273126 |
ccttagagtctcatcattgttcctttgagtgagtttttgttcaatttcagccaactttgttccgaatctcttgaaagcctctaatggttgtgaatcagaa |
6273225 |
T |
|
| Q |
286 |
gtccaattatcaccttcaattctctgtccaaggtattgt |
324 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
6273226 |
gtccaaagatcaccttcaattctctgtccaaggtattgt |
6273264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 86 - 323
Target Start/End: Original strand, 6361700 - 6361937
Alignment:
| Q |
86 |
tttagatggagatactattgggaatgcctctgcaagtcaatccttcctcactagaaggataaagcaaagtatatggcatcttcactggtccataacgatt |
185 |
Q |
| |
|
||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||| | |||||| |
|
|
| T |
6361700 |
tttagatagagacactgttgggaatgcctctgcaagtcaatccttcctcactagaaggataaagcagagtgtaaggcatcttcactggtccgttacgatt |
6361799 |
T |
|
| Q |
186 |
cctcagtgtctcatcgttgttcctttgagtgagttttttctcaatttcagccagcttctttccaaacctcttgaaagcctcttttggttgtgaatcagaa |
285 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||| |||||||||||||| |||||||||||||||||| || | ||||||||| |||||||||||| |
|
|
| T |
6361800 |
cctcagtgtctcatcattgttcctttgaatgagtttttgctcaatttcagccaacttctttccaaacctcttaaaggactcttttggctgtgaatcagaa |
6361899 |
T |
|
| Q |
286 |
gtccaattatcaccttcaattctctgtccaaggtattg |
323 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
6361900 |
gtccagagatcaccttcaattctctctccaaggtattg |
6361937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 86 - 324
Target Start/End: Original strand, 7457556 - 7457794
Alignment:
| Q |
86 |
tttagatggagatactattgggaatgcctctgcaagtcaatccttcctcactagaaggataaagcaaagtatatggcatcttcactggtccataacgatt |
185 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||| ||||| |
|
|
| T |
7457556 |
tttagatggagacactgttgggaatgcctctggaagtcaatccttcctcactagtaggataaagcagtgtatatggcatcttcacaggtccatttcgatt |
7457655 |
T |
|
| Q |
186 |
cctcagtgtctcatcgttgttcctttgagtgagttttttctcaatttcagccagcttctttccaaacctcttgaaagcctcttttggttgtgaatcagaa |
285 |
Q |
| |
|
||||||||||||||| |||||||||||| |||| |||||||| |||||||||| ||||||||||||| ||||| | |||| ||||||||||||||||||| |
|
|
| T |
7457656 |
cctcagtgtctcatcattgttcctttgaatgaggtttttctcgatttcagccaacttctttccaaacttcttgtaggcctgttttggttgtgaatcagaa |
7457755 |
T |
|
| Q |
286 |
gtccaattatcaccttcaattctctgtccaaggtattgt |
324 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
7457756 |
gtccagagatcaccttcaattctctctccaaggtattgt |
7457794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 86 - 324
Target Start/End: Original strand, 7469958 - 7470196
Alignment:
| Q |
86 |
tttagatggagatactattgggaatgcctctgcaagtcaatccttcctcactagaaggataaagcaaagtatatggcatcttcactggtccataacgatt |
185 |
Q |
| |
|
||||||| |||| ||| ||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||| ||||||||| ||||||| ||||| |
|
|
| T |
7469958 |
tttagatagagacactgttgggaatgcctctggaagtcaatccttcctcactagtaggataaagcagtgtatatgacatcttcacaggtccatttcgatt |
7470057 |
T |
|
| Q |
186 |
cctcagtgtctcatcgttgttcctttgagtgagttttttctcaatttcagccagcttctttccaaacctcttgaaagcctcttttggttgtgaatcagaa |
285 |
Q |
| |
|
||||||||||||||| |||||||||||| |||| |||||||||||||||| || ||||||||||||| ||||| | |||| |||||| |||||||||||| |
|
|
| T |
7470058 |
cctcagtgtctcatcattgttcctttgaatgaggtttttctcaatttcagacaacttctttccaaacttcttgtaggcctgttttggctgtgaatcagaa |
7470157 |
T |
|
| Q |
286 |
gtccaattatcaccttcaattctctgtccaaggtattgt |
324 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
7470158 |
gtccagagatcaccttcaattctctctccaaggtattgt |
7470196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 86 - 323
Target Start/End: Original strand, 6330367 - 6330604
Alignment:
| Q |
86 |
tttagatggagatactattgggaatgcctctgcaagtcaatccttcctcactagaaggataaagcaaagtatatggcatcttcactggtccataacgatt |
185 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||| ||||| || || || || || |
|
|
| T |
6330367 |
tttagatggagatactattaggaatgcctctgcaagtcaatcctttctcactagaaggataaagcagagtgtatggcatattcacaggcccgtatcggtt |
6330466 |
T |
|
| Q |
186 |
cctcagtgtctcatcgttgttcctttgagtgagttttttctcaatttcagccagcttctttccaaacctcttgaaagcctcttttggttgtgaatcagaa |
285 |
Q |
| |
|
|||| || |||||| |||||||||| | |||| ||| |||||||||||||| |||| ||||||||||||||||||| ||| ||| |||||||| ||| |
|
|
| T |
6330467 |
tctcaatgactcatcattgttcctttcaatgagctttacctcaatttcagccaacttccttccaaacctcttgaaagcttctaatggctgtgaatctgaa |
6330566 |
T |
|
| Q |
286 |
gtccaattatcaccttcaattctctgtccaaggtattg |
323 |
Q |
| |
|
|||||| || |||||| ||||||||||||||||||| |
|
|
| T |
6330567 |
gtccaaacctcgccttcatttctctgtccaaggtattg |
6330604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 91 - 323
Target Start/End: Original strand, 6319910 - 6320142
Alignment:
| Q |
91 |
atggagatactattgggaatgcctctgcaagtcaatccttcctcactagaaggataaagcaaagtatatggcatcttcactggtccataacgattcctca |
190 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||| || || || || || |||| |
|
|
| T |
6319910 |
atggagatactattaggaatgcctctgccagtcaatccttcctcactagaaggataaagcagagtgtatggcatcttcacaggcccgtatcggtttctca |
6320009 |
T |
|
| Q |
191 |
gtgtctcatcgttgttcctttgagtgagttttttctcaatttcagccagcttctttccaaacctcttgaaagcctcttttggttgtgaatcagaagtcca |
290 |
Q |
| |
|
|| |||||| |||||||||| |||| ||| |||||||||||||| |||| ||||||||||||||||||| ||| ||| ||||||||| ||||||| |
|
|
| T |
6320010 |
atgactcatcattgttccttttgatgagctttgcctcaatttcagccaacttccttccaaacctcttgaaagcttctaatggctgtgaatcaaaagtcca |
6320109 |
T |
|
| Q |
291 |
attatcaccttcaattctctgtccaaggtattg |
323 |
Q |
| |
|
| ||||||||| ||||||||||||||||||| |
|
|
| T |
6320110 |
agcctcaccttcatttctctgtccaaggtattg |
6320142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 88 - 323
Target Start/End: Original strand, 6389459 - 6389694
Alignment:
| Q |
88 |
tagatggagatactattgggaatgcctctgcaagtcaatccttcctcactagaaggataaagcaaagtatatggcatcttcactggtccataacgattcc |
187 |
Q |
| |
|
|||||||||| ||| ||||||||||||||| ||||||||||| |||||| |||||||| |||| ||| ||||||||||||||||| |||| | || | |
|
|
| T |
6389459 |
tagatggagacactgttgggaatgcctctgaaagtcaatcctggctcacttgaaggatagagcacagtgtatggcatcttcactggcccattcctgtttc |
6389558 |
T |
|
| Q |
188 |
tcagtgtctcatcgttgttcctttgagtgagttttttctcaatttcagccagcttctttccaaacctcttgaaagcctcttttggttgtgaatcagaagt |
287 |
Q |
| |
|
||| || |||||||||||||||| | |||| |||| |||||||||||||| ||||||||||||| ||||||| |||||| ||| | |||||| |||| |
|
|
| T |
6389559 |
tcaatgattcatcgttgttcctttcaatgagcttttgctcaatttcagccaacttctttccaaacttcttgaaggcctctactggctctgaatcgtaagt |
6389658 |
T |
|
| Q |
288 |
ccaattatcaccttcaattctctgtccaaggtattg |
323 |
Q |
| |
|
|||| ||||||||| ||||| ||||||| |||||| |
|
|
| T |
6389659 |
ccaaagatcaccttcgattctgtgtccaatgtattg |
6389694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 88 - 323
Target Start/End: Original strand, 6408708 - 6408943
Alignment:
| Q |
88 |
tagatggagatactattgggaatgcctctgcaagtcaatccttcctcactagaaggataaagcaaagtatatggcatcttcactggtccataacgattcc |
187 |
Q |
| |
|
|||||||||| ||| ||||||||||||||| ||||||||||| |||||| |||||||| |||| ||| |||||||||||||| || |||| | || | |
|
|
| T |
6408708 |
tagatggagacactgttgggaatgcctctgaaagtcaatcctggctcacttgaaggatagagcacagtgtatggcatcttcacaggcccattcctgtttc |
6408807 |
T |
|
| Q |
188 |
tcagtgtctcatcgttgttcctttgagtgagttttttctcaatttcagccagcttctttccaaacctcttgaaagcctcttttggttgtgaatcagaagt |
287 |
Q |
| |
|
||| || |||||||||||||||| | |||| |||| |||||||||||||| ||||||||||||| ||||||| |||||| ||| | |||||| |||| |
|
|
| T |
6408808 |
tcaatgattcatcgttgttcctttcaatgagcttttgctcaatttcagccaacttctttccaaacttcttgaaggcctctactggctctgaatcgtaagt |
6408907 |
T |
|
| Q |
288 |
ccaattatcaccttcaattctctgtccaaggtattg |
323 |
Q |
| |
|
|||| ||||||||| ||||| ||||||| |||||| |
|
|
| T |
6408908 |
ccaaagatcaccttcgattctgtgtccaatgtattg |
6408943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 88 - 323
Target Start/End: Original strand, 6422734 - 6422969
Alignment:
| Q |
88 |
tagatggagatactattgggaatgcctctgcaagtcaatccttcctcactagaaggataaagcaaagtatatggcatcttcactggtccataacgattcc |
187 |
Q |
| |
|
|||||||| | ||| ||||||||||||||| ||||||||||||| ||||||||||||||||||| ||| |||||||||||||| || || || || || | |
|
|
| T |
6422734 |
tagatggaaacactgttgggaatgcctctgaaagtcaatccttcttcactagaaggataaagcagagtgtatggcatcttcacaggcccgtatcggtttc |
6422833 |
T |
|
| Q |
188 |
tcagtgtctcatcgttgttcctttgagtgagttttttctcaatttcagccagcttctttccaaacctcttgaaagcctcttttggttgtgaatcagaagt |
287 |
Q |
| |
|
||| || ||| || |||||||| | || |||| |||||||||||||| |||| || ||||| ||||| | ||||||||||| |||| ||||||||| |
|
|
| T |
6422834 |
tcaatgactcgtcagcgttccttttaactagcttttcctcaatttcagccaacttccttgcaaacttcttgtaggcctcttttggctgtgcatcagaagt |
6422933 |
T |
|
| Q |
288 |
ccaattatcaccttcaattctctgtccaaggtattg |
323 |
Q |
| |
|
|||| ||||||||| ||||||| ||||||||||| |
|
|
| T |
6422934 |
ccaaagatcaccttcgattctctccccaaggtattg |
6422969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 322
Target Start/End: Original strand, 6368475 - 6368711
Alignment:
| Q |
86 |
tttagatggagatactattgggaatgcctctgcaagtcaatccttcctcactagaaggataaagcaaagtatatggcatcttcactggtccataacgatt |
185 |
Q |
| |
|
|||||||||||| ||| |||||||| ||||||| |||||||||| |||| ||||||||||| | ||| ||||| | |||||| || ||||| | || |
|
|
| T |
6368475 |
tttagatggagacactgttgggaatccctctgccagtcaatcctggtccactggaaggataaagaagagtgtatggaaacttcacaggcccatacctgtt |
6368574 |
T |
|
| Q |
186 |
cctcagtgtctcatcgttgttcctttgagtgagttttttctcaatttcagccagcttctttccaaacctcttgaaagcctcttttggttgtgaatcagaa |
285 |
Q |
| |
|
||| || ||||| |||||||||||| ||| | || |||||||||| || |||||| ||||| | ||| | || ||| ||| | || ||||||| |
|
|
| T |
6368575 |
tttcaatgactcattattgttcctttgaatgaactcttcctcaatttcaatcaatttctttgcaaactttttgtaggcttctactggctttggatcagaa |
6368674 |
T |
|
| Q |
286 |
gtccaattatcaccttcaattctctgtccaaggtatt |
322 |
Q |
| |
|
|||||| |||||||||| |||| ||||||||||||| |
|
|
| T |
6368675 |
gtccaaagatcaccttcagttctttgtccaaggtatt |
6368711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 6261726 - 6261782
Alignment:
| Q |
87 |
ttagatggagatactattgggaatgcctctgcaagtcaatccttcctcactagaagg |
143 |
Q |
| |
|
||||||||||||||| |||||||| ||||| |||| | |||||||||||| ||||| |
|
|
| T |
6261726 |
ttagatggagatactgttgggaattcctctaaaagtaagtccttcctcacttgaagg |
6261782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 89 - 267
Target Start/End: Original strand, 42691749 - 42691927
Alignment:
| Q |
89 |
agatggagatactattgggaatgcctctgcaagtcaatccttcctcactagaaggataaagcaaagtatatggcatcttcactggtccataacgattcct |
188 |
Q |
| |
|
|||| ||||||||||| ||||| ||||| |||| | |||||||||||||||||||| |||||||||||| ||||||| || |||||| ||| | || |
|
|
| T |
42691749 |
agatagagatactattaggaattcctctaaaagttagtccttcctcactagaaggatgaagcaaagtataaggcatctgaaccggtccaagacggtgtct |
42691848 |
T |
|
| Q |
189 |
cagtgtctcatcgttgttcctttgagtgagttttttctcaatttcagccagcttctttccaaacctcttgaaagcctct |
267 |
Q |
| |
|
|| ||||||| ||||| || |||| || || ||||||||||| |||| ||| ||||| ||| |||| || |||||| |
|
|
| T |
42691849 |
tagcttctcatcattgtttctctgagcaagattcttctcaatttctgccaacttgtttccgaacttcttaaaggcctct |
42691927 |
T |
|
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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 167
Target Start/End: Complemental strand, 36746365 - 36746297
Alignment:
| Q |
99 |
actattgggaatgcctctgcaagtcaatccttcctcactagaaggataaagcaaagtatatggcatctt |
167 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||| |||| | ||| |||||||||| || |||||||| |
|
|
| T |
36746365 |
actattgggaattcctctgcaagtcaagccttctccactggtaggtaaaagcaaagtgtagggcatctt |
36746297 |
T |
|
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